NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18674.1 Public Mus musculus 4 Phc2 23 108 98 CCDS HistoryNCBI Gene:54383Re-query CCDS DB by CCDS ID:18674.1Re-query CCDS DB by GeneID:54383See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030588.12 ENSMUSP00000030588.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030588.12Link to Ensembl Protein Viewer:ENSMUSP00000030588.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030588Re-query CCDS DB by Protein ID:ENSMUSP00000030588
Original member Current member EBI ENSMUST00000106080.7 ENSMUSP00000101690.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106080.7Link to Ensembl Protein Viewer:ENSMUSP00000101690.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106080Re-query CCDS DB by Protein ID:ENSMUSP00000101690
Original member Current member NCBI NM_001195130.1 NP_001182059.1 Accepted alive Link to Nucleotide Sequence:NM_001195130.1Link to Protein Sequence:NP_001182059.1Re-query CCDS DB by Nucleotide ID:NM_001195130Re-query CCDS DB by Protein ID:NP_001182059Link to BLAST:NP_001182059.1
Original member Current member NCBI NM_018774.4 NP_061244.1 Accepted alive Link to Nucleotide Sequence:NM_018774.4Link to Protein Sequence:NP_061244.1Re-query CCDS DB by Nucleotide ID:NM_018774Re-query CCDS DB by Protein ID:NP_061244Link to BLAST:NP_061244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182059.1 850 Q9QWH1-1 850 100% 0 0
NP_061244.1 850 Q9QWH1-1 850 100% 0 0

Chromosomal Locations for CCDS 18674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128705052 128705234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128707937 128708095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128708977 128709054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128709499 128709663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128711058 128711144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128712059 128712359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128722909 128723300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128723548 128723713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128743354 128743556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128745002 128745131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128745790 128745904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128747101 128747242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128748008 128748284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128751500 128751654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2553 nt):
ATGGAGAATGAGCTGCCAGTCCCCCACACATCCAACCGGGCCAGTGTCACCACCAACACCAGTGGGACCA
ATAGTAGCAGTGGCTGCATCAGCAGCAGCGGCGGTGGTGGTGGCAGCGGTGGCCGCCCCACTGCACCCCA
GATTTCTGTGTACAGTGGGATTCCTGACCGGCAGACTGTGCAGGTGATCCAGCAGGCCCTGCACAGGCAG
CCCAGCACGGCGGCGCAGTACCTGCAGCAGATGTATGCTGCCCAGCAACAACACCTCATGCTGCAGACAG
CGGCCTTACAGCAGCAGCACCTCAGCAGCGCGCAGCTCCAGAGCCTGGCAGCAGTGCAGCAGGCAAGCCT
GGTGGCCAACAGACAAGGAAGTACTCCCGGTAGCAGTGTGTCCTCACAGGCTCCTGCCCAGTCTTCTTCA
CTCAATCTGGCAGCCTCCCCGGCAGCAGCCCAGCTTATCAACCGGGCACAGAGTGTCAATTCAGCCGCAG
CCTCGGGCCTTGCCCAGCAGGCCGTGCTCTTGGGCAACACGTCCTCCCCTGCCCTGACTGCCAGCCAAGC
ACAGATGTACCTCAGGGCGCAGATGCTCATCTTCACGCCCACGGCCACCGTCGCTACTGTTCAGCCTGAG
CTCTGCACTGGTTCCCCTGCTCGGCCCCCTACCCCTGCCCAGGTACAGAACCTGACGCTTCGCACCCAGC
AGACACCAGCAGCAGCAGCCTCGGGCCCTCCCCCCACCCAGCCTGTCCTGCCCAGCTTGGCCCTGAAACC
CACACCCAGCAGTAGCCAGCCTCTGCCTGCCCCACCACAGGGCAGGACCATGGCTCAGGGTTCCCCTGCG
GGTGCCAAGCCTAGTGGGACTGACAATGCGCCAGAGACACTCAAGGCAGGAGATGGTAACTGCAACATGG
AGGGCCGGCCAGGGCCTGGCCGGGCAGTTCCTGCTGTGGCTACTCACCCGCTCATTGCACCAGCTTATGC
TCACCTGCAGTCACACCAGCTCCTCCCACAGCCGCCAGCGAAGCACCCACAGCCCCAGTTTGTGGCCCAA
CAGCAACCACAGCCACCACGACCTGCACCCCAAGTCCAGTCCCAACCCCAGCTTGCCTCAGTCTCCCCAA
GCCTGGCCCTACAGTCCAGTCCAGAAGACCATGCCCTGCCTCTAGGCTCAGTGACACAGGCCCTGCCTCT
CCAGTGCTCTACCACGCATGTCCACAAGCCAGGGAACAGCCAGCAGTGTCACCTTCCCACACTAGACACC
GGGTCTCAGAATGGACATCCTGAGGGTGGGTCCCATCCCCCCCAGCGAAGGTTCCAGCACACCTCAGCTG
TGATCTTACAGGTGCAGCCCGCTTCTCCAGTTACGCCCCAGCAGTGTGCTCCCGATGACTGGAAGGAAGT
GGTGCCAGCGGAGAAGAGTGTGCCTGTGGCTCGGCCAGGCCCGTCCCCACACCAGCAAGCCATCATCCCT
GCCATACCCGGTGGCTTGCCTGGACCCAAGAGTCCCAACATCCAGCAGTGCCCAGCTCACGAGACAGGGC
AGGGCATTGTTCATGCACTGACCGACCTCAGCAGCCCCGGCATGACCTCAGGGAACGGAAACTCTGCCTC
CAGCATCGCCGGCACTGCCCCCCAGAATGGTGAGAATAAACCACCACAGGCCATTGTGAAACCCCAAATC
CTGACGCATGTTATCGAAGGGTTTGTGATCCAGGAGGGGGCGGAGCCTTTCCCGGTGGGACGCTCGTCCC
TGCTGGTAGGGAATCTCAAAAAGAAGTATGCACAGGGGTTCTTGCCTGAGAAGCCTCCACAGCAGGACCA
CACCACCACCACCGACTCAGAGATGGAGGAGCCCTACCTGCAAGAATCCAAAGAGGAGGGCACTCCCCTC
AAACTCAAGTGTGAGCTCTGTGGACGGGTGGACTTTGCCTACAAGTTCAAGCGTTCCAAGCGCTTCTGTT
CCATGGCTTGTGCAAAGAGGTATAATGTGGGATGCACCAAACGAGTGGGACTTTTTCACTCAGACCGAAG
CAAGCTGCAGAAGGCAGGGACCACAACCCACAACCGCCGACGGGCCAGCAAGGCCAGTCTGCCCACACTC
ACCAAGGACACCAAGAAGCAGCCCTCAGGCACTGTACCCCTTTCAGTTACTGCCGCCTTGCAGCTGGCGC
ACAGCCAGGAGGACTCCAGCCGGTGCTCAGATAACTCCAGCTATGAGGAGCCCTTGTCACCCATCTCAGC
CAGCTCGTCCACCTCGCGACGGCGCCAAGGCCAGAGGGACCTGGATCTCCCTGACATGCACATGAGGGAC
CTTGTGGGCGTGGGACACCACTTCCTGCCGAGCGAGCCCACAAAATGGAATGTAGAGGATGTCTATGAGT
TCATCCGCTCTCTGCCAGGCTGCCAGGAGATCGCGGAGGAGTTCCGTGCGCAGGAGATTGATGGGCAAGC
CTTGCTGCTGCTCAAGGAGGACCACCTAATGAGCGCCATGAACATCAAGCTAGGGCCCGCCCTGAAGATC
TACGCACGCATCAGCATGCTCAAGGACTCCTAG

Translation (850 aa):
MENELPVPHTSNRASVTTNTSGTNSSSGCISSSGGGGGSGGRPTAPQISVYSGIPDRQTVQVIQQALHRQ
PSTAAQYLQQMYAAQQQHLMLQTAALQQQHLSSAQLQSLAAVQQASLVANRQGSTPGSSVSSQAPAQSSS
LNLAASPAAAQLINRAQSVNSAAASGLAQQAVLLGNTSSPALTASQAQMYLRAQMLIFTPTATVATVQPE
LCTGSPARPPTPAQVQNLTLRTQQTPAAAASGPPPTQPVLPSLALKPTPSSSQPLPAPPQGRTMAQGSPA
GAKPSGTDNAPETLKAGDGNCNMEGRPGPGRAVPAVATHPLIAPAYAHLQSHQLLPQPPAKHPQPQFVAQ
QQPQPPRPAPQVQSQPQLASVSPSLALQSSPEDHALPLGSVTQALPLQCSTTHVHKPGNSQQCHLPTLDT
GSQNGHPEGGSHPPQRRFQHTSAVILQVQPASPVTPQQCAPDDWKEVVPAEKSVPVARPGPSPHQQAIIP
AIPGGLPGPKSPNIQQCPAHETGQGIVHALTDLSSPGMTSGNGNSASSIAGTAPQNGENKPPQAIVKPQI
LTHVIEGFVIQEGAEPFPVGRSSLLVGNLKKKYAQGFLPEKPPQQDHTTTTDSEMEEPYLQESKEEGTPL
KLKCELCGRVDFAYKFKRSKRFCSMACAKRYNVGCTKRVGLFHSDRSKLQKAGTTTHNRRRASKASLPTL
TKDTKKQPSGTVPLSVTAALQLAHSQEDSSRCSDNSSYEEPLSPISASSSTSRRRQGQRDLDLPDMHMRD
LVGVGHHFLPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKI
YARISMLKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH