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Report for CCDS15467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15467.1 Public Mus musculus 1 Uap1 23 108 98 CCDS HistoryNCBI Gene:107652Re-query CCDS DB by CCDS ID:15467.1Re-query CCDS DB by GeneID:107652See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027981.7 ENSMUSP00000027981.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027981.7Link to Ensembl Protein Viewer:ENSMUSP00000027981.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027981Re-query CCDS DB by Protein ID:ENSMUSP00000027981
Original member NCBI NM_133806.5 NP_598567.2 Updated not alive Link to Nucleotide Sequence:NM_133806.5Link to Protein Sequence:NP_598567.2Re-query CCDS DB by Nucleotide ID:NM_133806Re-query CCDS DB by Protein ID:NP_598567
NCBI NM_133806.6 NP_598567.2 Updated not alive Link to Nucleotide Sequence:NM_133806.6Link to Protein Sequence:NP_598567.2Re-query CCDS DB by Nucleotide ID:NM_133806Re-query CCDS DB by Protein ID:NP_598567
Current member NCBI NM_133806.7 NP_598567.2 Accepted alive Link to Nucleotide Sequence:NM_133806.7Link to Protein Sequence:NP_598567.2Re-query CCDS DB by Nucleotide ID:NM_133806Re-query CCDS DB by Protein ID:NP_598567Link to BLAST:NP_598567.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598567.2 521 Q91YN5-3 521 99.8081% 0 1

Chromosomal Locations for CCDS 15467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170142480 170142572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170143397 170143463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170147996 170148043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170149271 170149459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170150312 170150452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170150943 170151136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170156924 170157096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170158751 170158926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170161367 170161571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170166626 170166905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGAATGTCAATGACCTCAAACAAAGGCTGTCCCAAGCTGGGCAAGAGCACCTGCTGCAGTTCTGGAATG
AGCTGTCCGAAGCCCAGCAGGTAGAACTTTATATGGAGCTCCAGGCCATGAACTTTGAAGAGCTGAACTC
CTTTTTCCGGAAGGCCATTGGTGAATTTGATCGATCCTCTCACCAAGAAAAGGTGGACGCACGAATGGAG
CCTGTGCCCCGGCAGGTTTTGGGCAGTGCTACCAGAGATCAAGAGCAGCTGCAGGCCTGGGAAAGTGAAG
GACTTTCTCAGATTTCTCAGAACAAAGTAGCAGTTCTTCTTCTAGCTGGTGGGCAGGGGACAAGACTTGG
AGTCTCATATCCCAAGGGCATGTATGATGTTGGCTTGCCATCCCACAAGACGCTTTTTCAGATTCAAGCA
GAACGTATTCTGAAACTCCAGCAGTTAGCTGAAAAACACCATGGCAACAAGTGCACCATCCCATGGTATA
TAATGACCAGCGGCAGAACAATGGAATCAACGAAGGAGTTCTTCACAAAGCACAAGTTCTTTGGTTTAAA
AAAGGAGAATGTGGTGTTTTTCCAGCAGGGAATGCTGCCTGCTATGAGTTTTGATGGGAAAATTATCTTG
GAAGAGAAAAACAAAGTGTCTATGGCTCCAGATGGGAATGGTGGTCTCTACCGGGCTCTTGCAGCCCAAA
ACATTGTGGAGGACATGGAGCAAAGAGGCATCTGCAGTATTCATGTCTATTGTGTGGACAACATATTGGT
AAAAGTGGCTGACCCGCGGTTCATTGGATTCTGCATTCAGAAAGGAGCAGACTGTGGGGCAAAGGTGGTA
GAGAAAACGAATCCCACAGAGCCAGTTGGAGTGGTTTGCCGGGTGGATGGAGTATACCAGGTGGTAGAAT
ACAGCGAGATCTCTCTGGCAACAGCTCAAAGGCGAAGTTCAGATGGACGGCTGCTGTTCAATGCAGGGAA
CATTGCCAATCACTTCTTCACTGTCCCGTTCCTGAAAGATGTTGTCAATGTTTATGAACCTCAGTTGCAG
CACCATGTGGCTCAAAAGAAGATTCCATATGTGGACTCCCAGGGGCACTTCATTAAGCCAGACAAGCCAA
ATGGAATAAAGATGGAAAAATTTGTCTTTGACATCTTCCAGTTTGCAAAGAAGTTTGTGGTGTATGAAGT
ATTACGGGAAGATGAGTTTTCCCCGCTCAAGAATGCAGACAGTCAGAACGGGAAGGACAACCCGACCACA
GCAAGGCATGCTTTGATGTCCCTTCACCACTGCTGGGTCCTCAATGCCGGGGGACACTTCATAGATGAGA
ATGGCTCTCGCCTCCCAGCCATCCCCCGTGCTACAAATGGAAAGTCAGAGGCCATCACAGCTGATGTCAA
TCACAACTTGAAAGATGCCAATGATGTACCGATCCAGTGTGAAATCTCTCCCCTCATCTCTTATGCTGGA
GAGGGCCTTGAAGGTTATGTGGCAGATAAAGAGTTCCATGCACCGCTAATCATCGATGAGAATGGAGTTC
ATGAGCTGGTGAAAAATGGCATATAA

Translation (521 aa):
MNVNDLKQRLSQAGQEHLLQFWNELSEAQQVELYMELQAMNFEELNSFFRKAIGEFDRSSHQEKVDARME
PVPRQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGMYDVGLPSHKTLFQIQA
ERILKLQQLAEKHHGNKCTIPWYIMTSGRTMESTKEFFTKHKFFGLKKENVVFFQQGMLPAMSFDGKIIL
EEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGICSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVV
EKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQRRSSDGRLLFNAGNIANHFFTVPFLKDVVNVYEPQLQ
HHVAQKKIPYVDSQGHFIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTT
ARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRATNGKSEAITADVNHNLKDANDVPIQCEISPLISYAG
EGLEGYVADKEFHAPLIIDENGVHELVKNGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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