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Report for CCDS56088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56088.1 Public Homo sapiens 19 GTPBP3 24 110 108 CCDS HistoryNCBI Gene:84705Re-query CCDS DB by CCDS ID:56088.1Re-query CCDS DB by GeneID:84705See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361619.9 ENSP00000354598.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361619.9Link to Ensembl Protein Viewer:ENSP00000354598.4Re-query CCDS DB by Nucleotide ID:ENST00000361619Re-query CCDS DB by Protein ID:ENSP00000354598
Original member Current member NCBI NM_001195422.1 NP_001182351.1 Accepted alive Link to Nucleotide Sequence:NM_001195422.1Link to Protein Sequence:NP_001182351.1Re-query CCDS DB by Nucleotide ID:NM_001195422Re-query CCDS DB by Protein ID:NP_001182351Link to BLAST:NP_001182351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182351.1 514 Q969Y2-4 514 100% 0 0

Chromosomal Locations for CCDS 56088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17335004 17335122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17338008 17338255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17338365 17338451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17338539 17338741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17338954 17339026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17339123 17339266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17339434 17339599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17341044 17341322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17341478 17341703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGTGCATTCTCCAACTTGTCCCCACCCATGCTTTCTTCTGGTCCCCGCCTCGGAGCCTCAGTTTCCCC
ATCTGCAAACTCCGGACCCTGGAGACGCTGTTTGGAATGTGAGATGGGCATTGTGCACGCGCCGGAGCAG
CGGCGCACCAGCCCCCGGCTCCGGCGCCACCATCTTCGCGCTAAGCTCTGGCCAAGGCCGCTGCGGCATC
GCAGTGATCCGGACCAGCGGCCCCGCCAGCGGCCACGCCCTCCGAATTCTCACAGCACCCCGAGACCTGC
CCCTTGCTCGCCACGCCAGCCTGCGCCTGCTCAGCGATCCCCGCTCCGGGGAGCCTCTGGACCGCGCACT
GGTGCTCTGGTTCCCAGGTCCCCAGAGTTTCACCGGTGAGGACTGCGTGGAGTTCCACGTGCATGGAGGC
CCGGCAGTGGTGAGCGGCGTCCTGCAGGCCTTGGGCAGCGTGCCAGGGCTTCGACCGGCGGAGGCAGGCG
AGTTCACCAGACGGGCGTTCGCCAATGGGAAGCTGAACCTGACCGAAGTGGAGGGGCTGGCGGACCTTAT
CCACGCGGAAACAGAGGCGCAGCGGCGGCAGGCCCTCAGGCAGCTGGACGGAGAGCTGGGCCACCTCTGC
CGTGGCTGGGCCGAGACCCTCACCAAAGCTCTGGCCCACGTGGAGGCCTATATCGATTTCGGCGAGGATG
ACAACCTGGAGGAGGGGGTCCTGGAGCAAGCCGACATCGAAGTACGGGCACTGCAGGTGGCCCTGGGTGC
ACATCTACGAGATGCCAGGCGCGGGCAGAGGCTCCGCTCAGGGGTGCACGTAGTGGTCACTGGACCCCCC
AATGCGGGCAAGAGCAGCCTAGTGAACCTGCTCAGTCGGAAGCCTGTGTCCATCGTGTCCCCGGAGCCAG
GGACCACCCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTCCTGTGCTGCTGAGCGACACGGC
TGGGTTGCGGGAGGGCGTGGGGCCCGTGGAGCAGGAGGGCGTGCGGCGCGCCCGGGAGAGGCTAGAGCAG
GCTGACCTCATTCTGGCCATGCTGGATGCTTCTGACCTGGCCTCTCCCTCCAGTTGCAACTTCCTGGCCA
CCGTCGTAGCCTCTGTGGGAGCCCAGAGCCCCAGTGACAGCAGCCAGCGCCTCCTCCTGGTGCTGAACAA
GTCGGACCTGCTGTCCCCGGAGGGCCCAGGTCCCGGTCCTGACCTGCCCCCGCACCTGCTGCTGTCCTGT
CTGACGGGAGAGGGGCTGGACGGCCTCCTGGAGGCGCTGAGGAAGGAGCTAGCTGCAGTGTGTGGGGACC
CGTCCACAGATCCCCCGCTGCTGACCCGAGCAAGGCACCAGCACCACCTCCAGGGTTGCCTGGATGCCCT
CGGCCACTACAAGCAGTCAAAAGACCTGGCCCTGGCGGCAGAGGCGCTGCGGGTGGCCCGGGGTCACCTG
ACCCGGCTCACAGGTGGAGGGGGTACCGAGGAGATCCTGGACATCATCTTCCAGGACTTCTGTGTGGGCA
AGTGA

Translation (514 aa):
MVHSPTCPHPCFLLVPASEPQFPHLQTPDPGDAVWNVRWALCTRRSSGAPAPGSGATIFALSSGQGRCGI
AVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRALVLWFPGPQSFTGEDCVEFHVHGG
PAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGLADLIHAETEAQRRQALRQLDGELGHLC
RGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPP
NAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQ
ADLILAMLDASDLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSC
LTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYKQSKDLALAAEALRVARGHL
TRLTGGGGTEEILDIIFQDFCVGK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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