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Report for CCDS17525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17525.1 Public Mus musculus 3 Slc39a1 23 108 98 CCDS HistoryNCBI Gene:30791Re-query CCDS DB by CCDS ID:17525.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015467.8 ENSMUSP00000076012.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015467.8Link to Ensembl Protein Viewer:ENSMUSP00000076012.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000015467Re-query CCDS DB by Protein ID:ENSMUSP00000076012
Original member NCBI NM_013901.2 NP_038929.2 Updated not alive Link to Nucleotide Sequence:NM_013901.2Link to Protein Sequence:NP_038929.2Re-query CCDS DB by Nucleotide ID:NM_013901Re-query CCDS DB by Protein ID:NP_038929
Current member NCBI NM_013901.3 NP_038929.2 Accepted alive Link to Nucleotide Sequence:NM_013901.3Link to Protein Sequence:NP_038929.2Re-query CCDS DB by Nucleotide ID:NM_013901Re-query CCDS DB by Protein ID:NP_038929Link to BLAST:NP_038929.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038929.2 324 Q9QZ03 324 100% 0 0

Chromosomal Locations for CCDS 17525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90248977 90249163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90249326 90249456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90251686 90252342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGGGCCCTGGGGGGAGCCAGAGCTCCTGGTGTGGCGCCCAGAAGCAGTCGCATCGGAGCCCTCGGTGC
CAGTAGGGCTGGAAGTGAAGCTGGGGGCCCTGGTGCTGCTGCTGCTGCTGACACTCATCTGCAGCCTGGT
ACCTGTCTGTGTGCTTCGAAGGTCAGGTGCTAACCATGAAGCTTCAGCCTCGGGCCAGAAAGCCCTGAGC
CTCGTCAGCTGCTTCGCAGGAGGAGTCTTTTTGGCTACATGTCTTCTGGACCTGCTGCCTGACTACCTGG
CTGCCATAGATGAGGCCTTGGAGGCCCTGCATGTGACGCTTCAGTTCCCCTTGCAAGAGTTCATCTTGGC
CATGGGTTTCTTCCTGGTCCTGGTGATGGAGCAGATCACGCTGGCTTACAAGGAACAGACCAGTCCACCC
CACCCGGAAGAGACAAGGGCTCTACTGGGCACAGTGAATGGTGGGCCTCAGCACTGGCACGATGGACCAG
GGATCCCCCAGGCCGGCGGAACTCCAGCAGCTCCCTCAGCCCTGCGTGCTTGTGTCCTGGTCTTCTCCTT
AGCCTTGCACTCAGTATTTGAGGGCCTGGCTGTAGGGTTGCAGCGAGACAGGGCTCGGGCAATGGAGCTG
TGCCTAGCTCTGCTGCTTCACAAAGGCATTCTGGCAGTCAGCCTGTCCCTGCGGCTGCTACAGAGCCACC
TACGTGTGCAGGTGGTGGCTGGCTGCGGGATCCTCTTCTCATGTATGACACCTCTGGGCATCGGGTTGGG
TGCAGCTCTGGCAGAGTCAGCTGGGCCTCTGCACCAGCTGGCCCAATCTGTTCTAGAGGGCATGGCAGCT
GGCACCTTCCTCTATATCACCTTCCTGGAAATTCTACCCCAGGAACTGGCCACTTCTGAGCAGAGGATCC
TCAAGGTCATTCTGCTCCTAGCAGGCTTTGCCCTGCTCACTGGCCTTCTCTTTGTCCAAATCTAA

Translation (324 aa):
MGPWGEPELLVWRPEAVASEPSVPVGLEVKLGALVLLLLLTLICSLVPVCVLRRSGANHEASASGQKALS
LVSCFAGGVFLATCLLDLLPDYLAAIDEALEALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQTSPP
HPEETRALLGTVNGGPQHWHDGPGIPQAGGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMEL
CLALLLHKGILAVSLSLRLLQSHLRVQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLEGMAA
GTFLYITFLEILPQELATSEQRILKVILLLAGFALLTGLLFVQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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