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Report for CCDS253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
253.1 Public Homo sapiens 1 STPG1 24 110 108 CCDS HistoryNCBI Gene:90529Re-query CCDS DB by CCDS ID:253.1Re-query CCDS DB by GeneID:90529See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000003583.12 ENSP00000003583.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000003583.12Link to Ensembl Protein Viewer:ENSP00000003583.8Re-query CCDS DB by Nucleotide ID:ENST00000003583Re-query CCDS DB by Protein ID:ENSP00000003583
Original member Current member NCBI NM_178122.5 NP_835223.1 Accepted alive Link to Nucleotide Sequence:NM_178122.5Link to Protein Sequence:NP_835223.1Re-query CCDS DB by Nucleotide ID:NM_178122Re-query CCDS DB by Protein ID:NP_835223Link to BLAST:NP_835223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835223.1 287 Q5TH74-3 287 100% 0 0

Chromosomal Locations for CCDS 253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24358543 24358619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24360851 24361041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24369674 24369839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24373702 24373810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24379653 24379823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24383902 24384003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24401319 24401366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGAACGCACTGGCAAACATCCCAGACGTGCCAGTGAAGTACAGAAAGAATGATATCCCAGGACCTGGGT
TCTACAATGTTATTCACCAGTCACCGGTGTCCAACAGTGTCTCATTGTCCAAGAAAGGAACTTGCATGTT
TCCCTCAATGTGCGCCCGATTGGACACCATCATTTCTAAATACCCTGCAGCGAATGCATACACTATCCCA
TCGGATTTTATTTCCAAGAGAGACTTTAGTAATTCGTGTTCCAGCATGTTCCAGTTGCCAAGCTTTATGA
AAGCTCTCAAGTTTGAAACTCCTGCACCAAACTATTACAATGCCTCTGTCTCTTGCTGCAAGCAGAGAAA
CAACGTCTGTACTCGAGCCGGGTTTATGTCAAAAACCCAAAGAGGATCTTTCGCTTTTGCTGATAAAGGA
CCTCCCCCAGGGCATTATGATATCAACGAATCCCTTGTGAAGCAGTCGCCAAATACATTAATGTCTTGTT
TTAAATCAAAAACCAACCGTGGATTAAAACTGACGTCAACAGGCCCGGGACCTGGTTATTACAACCCCAG
TGATTGCACAAAAGTTCCAAAAAAGACTCTTTTCCCGAAAAACCCCATCCTGAACTTCTCTGCTCAGCCT
TCGCCTCTGCCTCCGAAGCCACCTTTCCCAGGTCCTGGTCAGTATGAGATCGTGGACTACTTAGGCCCCC
GCAAGCATTTCATCTCTAGTGCATCATTCGTGTCCAATACCAGCCGGTGGACAGCGGCGCCGCCTCAGCC
AGGCCTGCCTGGCCCAGCTACGTACAAGCCAGAGCTTCCAGGAAAGCAGTCCTTCCTCTACAACGAGGAC
AAGAAATGGATCCCGGTTCTGTAG

Translation (287 aa):
MNALANIPDVPVKYRKNDIPGPGFYNVIHQSPVSNSVSLSKKGTCMFPSMCARLDTIISKYPAANAYTIP
SDFISKRDFSNSCSSMFQLPSFMKALKFETPAPNYYNASVSCCKQRNNVCTRAGFMSKTQRGSFAFADKG
PPPGHYDINESLVKQSPNTLMSCFKSKTNRGLKLTSTGPGPGYYNPSDCTKVPKKTLFPKNPILNFSAQP
SPLPPKPPFPGPGQYEIVDYLGPRKHFISSASFVSNTSRWTAAPPQPGLPGPATYKPELPGKQSFLYNED
KKWIPVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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