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Report for CCDS59308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59308.1 Public Homo sapiens 18 NOL4 24 110 108 CCDS HistoryNCBI Gene:8715Re-query CCDS DB by CCDS ID:59308.1Re-query CCDS DB by GeneID:8715See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589544.5 ENSP00000465450.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589544.5Link to Ensembl Protein Viewer:ENSP00000465450.1Re-query CCDS DB by Nucleotide ID:ENST00000589544Re-query CCDS DB by Protein ID:ENSP00000465450
Original member Current member NCBI NM_001198548.1 NP_001185477.1 Accepted alive Link to Nucleotide Sequence:NM_001198548.1Link to Protein Sequence:NP_001185477.1Re-query CCDS DB by Nucleotide ID:NM_001198548Re-query CCDS DB by Protein ID:NP_001185477Link to BLAST:NP_001185477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185477.1 536 O94818-2 536 100% 0 0

Chromosomal Locations for CCDS 59308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 33852842 33853035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33883244 33883424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33958239 33958418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34019318 34019601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34093465 34093597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34104047 34104159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34105049 34105160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34129871 34130020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34222990 34223253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGAGAGCGAGCGCGACATGTACCGCCAGTTCCAGGACTGGTGCCTCAGGACTTACGGGGACTCAGGCA
AGACCAAGACGGTGACCCGTAAAAAATACGAACGGATCGTCCAGCTCCTCAATGGCTCCGAGTCGAGCTC
CACGGACAACGCCAAATTTAAATTCTGGGTCAAATCGAAGGGCTTCCAGCTGGGCCAGCCGGACGAGGTC
CGCGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTACGTGCCTGTCAAGACCACGGATGGCGTAGGGGTAG
ATGAGAAGCTATCTTTACGACGGGTAGCTGTGGTTGAAGATTTCTTTGACATTATTTATTCGATGCATGT
GGAAACGGGGCCAAATGGAGAACAAATTCGGAAACACGCTGGACAAAAGAGAACTTACAAAGCAATTTCA
GAGAGCTATGCCTTCCTACCAAGAGAAGCGGTGACACGATTTCTAATGAGCTGCTCAGAGTGCCAGAAAA
GAATGCATTTAAACCCAGATGGAACAGATCATAAAGATAATGGAAAACCTCCCACTTTGGTGACCAGCAT
GATTGACTACAACATGCCAATTACCATGGCCTACATGAAACACATGAAGCTGCAGCTGCTAAACTCACAG
CAAGATGAGGATGAAAGTTCAATAGAAAGTGATGAATTTGACATGAGTGATTCAACACGGATGTCAGCTG
TGAACTCTGATCTTAGCTCCAATCTTGAAGAAAGAATGCAAAGTCCCCAGAATCTTCATGGCCAGCAAGA
TGATGATTCTGCTGCAGAGAGCTTTAATGGCAATGAGACTCTGGGGCACAGTTCAATTGCTTCAGGGGGA
ACACACAGCAGGGAGATGGGAGACTCCAACAGTGATGGCAAAACTGGGCTGGAGCAAGATGAACAGCCAC
TGAACCTGAGTGACAGTCCCCTCTCTGCGCAGCTAACTTCGGAATACAGAATAGATGATCACAACAGTAA
TGGGAAAAACAAGTATAAGAATCTTCTAATTTCTGACCTCAAGATGGAACGAGAGGCGAGAGAAAATGGA
AGCAAGTCTCCTGCACATAGTTACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTAGACCGAGGAGCTG
AGGACCTCTCACTAAACAGGGGAGATGAGGACGAAGATGACCACGAGGACCATGACGATTCGGAGAAAGT
TAATGAGACAGACGGCGTTGAAGCCGAGCGGCTGAAAGCTTTTAATGATGAGTCTGCTCCAGCTGACAAA
CAGTGTAAACCAGAGGCGACCCAGGCCACTTACTCAACATCAGCTGTTCCAGGCTCACAGGACGTGCTGT
ACATCAATGGAAATGGGACCTATAGTTACCATAGTTACAGAGGGCTAGGAGGGGGTCTGCTAAATCTGAA
TGATGCTTCCAGCAGTGGACCCACTGATCTCAGCATGAAGAGACAATTGGCGACTAGCTCAGGATCCTCC
AGCAGCTCAAACTCCAGACCCCAGCTGAGTCCAACTGAAATCAATGCCGTGAGACAGCTTGTTGCAGGAT
ATCGAGAATCAGCTGCATTTTTATTGCGATCTGCAGATGAACTGGAAAATCTCATTTTACAACAGAACTG
A

Translation (536 aa):
MESERDMYRQFQDWCLRTYGDSGKTKTVTRKKYERIVQLLNGSESSSTDNAKFKFWVKSKGFQLGQPDEV
RGGGGGAKQVLYVPVKTTDGVGVDEKLSLRRVAVVEDFFDIIYSMHVETGPNGEQIRKHAGQKRTYKAIS
ESYAFLPREAVTRFLMSCSECQKRMHLNPDGTDHKDNGKPPTLVTSMIDYNMPITMAYMKHMKLQLLNSQ
QDEDESSIESDEFDMSDSTRMSAVNSDLSSNLEERMQSPQNLHGQQDDDSAAESFNGNETLGHSSIASGG
THSREMGDSNSDGKTGLEQDEQPLNLSDSPLSAQLTSEYRIDDHNSNGKNKYKNLLISDLKMEREARENG
SKSPAHSYSSYDSGKNESVDRGAEDLSLNRGDEDEDDHEDHDDSEKVNETDGVEAERLKAFNDESAPADK
QCKPEATQATYSTSAVPGSQDVLYINGNGTYSYHSYRGLGGGLLNLNDASSSGPTDLSMKRQLATSSGSS
SSSNSRPQLSPTEINAVRQLVAGYRESAAFLLRSADELENLILQQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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