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Report for CCDS56245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56245.1 Public Homo sapiens 3 XIRP1 24 110 108 CCDS HistoryNCBI Gene:165904Re-query CCDS DB by CCDS ID:56245.1Re-query CCDS DB by GeneID:165904See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396251.1 ENSP00000379550.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396251.1Link to Ensembl Protein Viewer:ENSP00000379550.1Re-query CCDS DB by Nucleotide ID:ENST00000396251Re-query CCDS DB by Protein ID:ENSP00000379550
Original member Current member NCBI NM_001198621.4 NP_001185550.1 Accepted alive Link to Nucleotide Sequence:NM_001198621.4Link to Protein Sequence:NP_001185550.1Re-query CCDS DB by Nucleotide ID:NM_001198621Re-query CCDS DB by Protein ID:NP_001185550Link to BLAST:NP_001185550.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185550.1 1121 Q702N8-2 1121 100% 0 0

Chromosomal Locations for CCDS 56245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39185653 39185661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39186089 39189445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3366 nt):
ATGGCCGACACCCAGACACAGGTGGCCCCCACACCAACCATGAGGATGGCAACTGCAGAGGACCTGCCCC
TCCCTCCACCCCCAGCCCTGGAGGACCTGCCACTGCCGCCACCCAAGGAATCCTTCTCCAAGTTCCATCA
GCAGCGGCAAGCTAGTGAGCTCCGCCGCCTCTACAGGCACATCCACCCTGAGCTCCGCAAGAATCTGGCT
GAGGCTGTGGCCGAGGATCTGGCTGAGGTCCTGGGCTCTGAGGAACCCACCGAGGGTGACGTTCAGTGCA
TGCGCTGGATCTTTGAGAACTGGAGACTGGATGCCATTGGAGAACACGAGAGGCCAGCTGCCAAGGAGCC
CGTGCTGTGTGGTGACGTCCAGGCCACCTCCCGCAAGTTTGAGGAAGGCTCCTTTGCCAACAGCACAGAC
CAGGAGCCAACCAGGCCCCAGCCAGGTGGAGGAGACGTTCGTGCAGCCCGCTGGCTATTTGAGACAAAGC
CACTGGACGAGCTGACAGGGCAAGCCAAGGAACTGGAGGCCACTGTGAGGGAGCCTGCAGCCAGCGGAGA
TGTGCAGGGTACCAGGATGCTCTTTGAGACGCGGCCGCTGGACCGCCTGGGCTCCCGCCCCTCCCTGCAG
GAGCAGAGCCCCTTGGAACTGCGCTCAGAGATCCAGGAGCTGAAGGGTGATGTGAAAAAGACAGTGAAGC
TCTTCCAAACGGAGCCCCTGTGTGCCATCCAGGATGCAGAGGGCGCCATCCATGAGGTCAAGGCCGCATG
CCGGGAGGAGATCCAAAGCAACGCGGTGAGGTCTGCCCGCTGGCTCTTTGAGACCCGGCCTCTGGACGCC
ATCAACCAGGACCCCAGCCAGGTGCGGGTGATCCGGGGGATTTCCCTGGAGGAGGGGGCCCGGCCCGACG
TCAGTGCAACTCGCTGGATCTTTGAGACACAGCCCCTGGATGCCATCCGGGAGATCTTGGTAGATGAGAA
GGACTTCCAGCCATCCCCAGACCTTATCCCACCTGGTCCAGATGTTCAGCAGCAGCAGCATCTGTTTGAG
ACCCGAGCGCTGGACACTCTGAAGGGGGACGAAGAGGCTGGAGCAGAGGCCCCACCCAAGGAGGAAGTGG
TCCCTGGTGATGTCCGCTCCACCCTGTGGCTATTTGAAACAAAGCCCCTGGATGCTTTCAGAGACAAGGT
CCAAGTGGGTCACCTACAGCGAGTGGATCCCCAGGACGGTGAGGGGCATCTATCCAGTGACAGCTCCTCA
GCACTGCCCTTCTCTCAGAGTGCCCCCCAGAGGGATGAGCTAAAGGGGGATGTGAAGACTTTTAAGAACC
TTTTTGAGACCCTTCCCTTGGACAGCATTGGACAGGGTGAGGTTCTGGCCCATGGGAGTCCAAGCAGAGA
AGAAGGAACTGATTCTGCTGGGCAGGCCCAGGGCATAGGGTCCCCAGTGTATGCCATGCAGGACAGCAAG
GGCCGCCTCCATGCCCTGACCTCTGTTAGCAGAGAGCAGATAGTCGGAGGTGATGTGCAGGGCTACAGGT
GGATGTTTGAGACACAGCCCCTAGACCAGCTCGGCCGAAGCCCCAGTACCATCGACGTGGTGCGGGGCAT
CACCCGGCAGGAAGTGGTGGCTGGGGACGTTGGCACAGCTCGGTGGCTTTTTGAGACCCAGCCCCTGGAG
ATGATCCACCAACGGGAGCAGCAGGAACGACAGAAAGAAGAAGGGAAGAGTCAGGGAGACCCCCAGCCTG
AGGCACCCCCAAAGGGCGATGTGCAGACCATCCGGTGGTTGTTCGAGACTTGCCCAATGAGTGAGTTGGC
CGAAAAGCAGGGGTCAGAGGTCACAGATCCCACAGCCAAGGCTGAGGCACAGTCCTGCACCTGGATGTTC
AAGCCCCAACCTGTGGACAGGCCAGTGGGCTCCAGGGAGCAGCACCTGCAGGTTAGCCAGGTCCCGGCTG
GGGAAAGACAGACAGACAGACACGTCTTTGAGACCGAGCCTCTTCAGGCCTCAGGCCGTCCCTGTGGAAG
ACGGCCTGTGAGATACTGCAGCCGCGTGGAGATCCCTTCAGGGCAGGTGTCTCGTCAGAAAGAGGTTTTT
CAGGCCCTGGAGGCAGGCAAGAAGGAAGAACAGGAGCCCCGGGTAATCGCTGGGTCCATCCCCGCGGGTT
CTGTCCACAAGTTCACTTGGCTTTTTGAGAATTGTCCCATGGGCTCCCTGGCAGCTGAGAGCATCCAAGG
GGGCAACCTCCTGGAAGAGCAGCCCATGAGCCCCTCAGGCAACAGGATGCAAGAGAGCCAGGAGACTGCA
GCTGAGGGGACCCTGCGGACTCTGCATGCCACACCTGGCATCCTGCACCATGGAGGCATCCTCATGGAGG
CCCGAGGGCCAGGGGAGCTCTGTCTTGCCAAGTATGTGCTCTCGGGCACAGGGCAGGGGCACCCTTATAT
ACGAAAGGAGGAGCTGGTGTCAGGTGAACTTCCCAGGATCATCTGCCAAGTCCTGCGCCGGCCAGATGTG
GACCAGCAGGGGCTGCTGGTGCAGGAAGACCCAACTGGCCAGCTCCAACTCAAGCCGCTGAGGCTGCCAA
CTCCAGGCAGCAGTGGGAATATTGAAGACATGGACCCTGAGCTCCAGCAGCTGCTGGCTTGCGGTCTTGG
GACCTCCGTGGCAAGGACTGGGCTGGTGATGCAGGAGACAGAGCAGGGCCTGGTCGCACTGACTGCCTAC
TCTCTGCAGCCCCGGCTAACTAGCAAGGCCTCTGAGAGGAGCAGCGTGCAGCTGTTGGCCAGCTGCATAG
ATAAAGGAGACCTGAGTGGCCTGCACAGTCTGCGGTGGGAGCCCCCGGCTGACCCGAGTCCAGTGCCAGC
CAGCGAGGGGGCCCAGAGCCTGCACCCAACTGAGAGCATCATCCATGTTCCCCCACTGGACCCCAGCATG
GGGATGGGGCATCTGAGAGCCTCAGGGGCCACCCCTTGCCCTCCTCAGGCCATTGGAAAGGCAGTCCCTC
TGGCTGGGGAAGCTGCAGCACCAGCCCAATTGCAAAACACAGAAAAGCAGGAAGACAGTCACTCTGGACA
GAAAGGGATGGCAGTCTTGGGAAAGTCAGAAGGAGCCACGACTACCCCTCCGGGGCCTGGGGCCCCAGAC
CTCCTGGCCGCCATGCAGAGTCTGCGGATGGCAACAGCTGAAGCCCAGAGCCTGCACCAGCAAGTTCTGA
ACAAGCACAAGCAGGGCCCCACCCCAACAGCCACTTCCAACCCCATCCAGGACGGTCTTCGGAAAGCTGG
GGCTACCCAAAGCAACATAAGGCCTGGGGGTGGAAGTGATCCCCGGATCCCAGCAGCCCCCAGAAAGCTG
CTGTGA

Translation (1121 aa):
MADTQTQVAPTPTMRMATAEDLPLPPPPALEDLPLPPPKESFSKFHQQRQASELRRLYRHIHPELRKNLA
EAVAEDLAEVLGSEEPTEGDVQCMRWIFENWRLDAIGEHERPAAKEPVLCGDVQATSRKFEEGSFANSTD
QEPTRPQPGGGDVRAARWLFETKPLDELTGQAKELEATVREPAASGDVQGTRMLFETRPLDRLGSRPSLQ
EQSPLELRSEIQELKGDVKKTVKLFQTEPLCAIQDAEGAIHEVKAACREEIQSNAVRSARWLFETRPLDA
INQDPSQVRVIRGISLEEGARPDVSATRWIFETQPLDAIREILVDEKDFQPSPDLIPPGPDVQQQQHLFE
TRALDTLKGDEEAGAEAPPKEEVVPGDVRSTLWLFETKPLDAFRDKVQVGHLQRVDPQDGEGHLSSDSSS
ALPFSQSAPQRDELKGDVKTFKNLFETLPLDSIGQGEVLAHGSPSREEGTDSAGQAQGIGSPVYAMQDSK
GRLHALTSVSREQIVGGDVQGYRWMFETQPLDQLGRSPSTIDVVRGITRQEVVAGDVGTARWLFETQPLE
MIHQREQQERQKEEGKSQGDPQPEAPPKGDVQTIRWLFETCPMSELAEKQGSEVTDPTAKAEAQSCTWMF
KPQPVDRPVGSREQHLQVSQVPAGERQTDRHVFETEPLQASGRPCGRRPVRYCSRVEIPSGQVSRQKEVF
QALEAGKKEEQEPRVIAGSIPAGSVHKFTWLFENCPMGSLAAESIQGGNLLEEQPMSPSGNRMQESQETA
AEGTLRTLHATPGILHHGGILMEARGPGELCLAKYVLSGTGQGHPYIRKEELVSGELPRIICQVLRRPDV
DQQGLLVQEDPTGQLQLKPLRLPTPGSSGNIEDMDPELQQLLACGLGTSVARTGLVMQETEQGLVALTAY
SLQPRLTSKASERSSVQLLASCIDKGDLSGLHSLRWEPPADPSPVPASEGAQSLHPTESIIHVPPLDPSM
GMGHLRASGATPCPPQAIGKAVPLAGEAAAPAQLQNTEKQEDSHSGQKGMAVLGKSEGATTTPPGPGAPD
LLAAMQSLRMATAEAQSLHQQVLNKHKQGPTPTATSNPIQDGLRKAGATQSNIRPGGGSDPRIPAAPRKL
L


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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