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Report for CCDS13278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13278.1 Public Homo sapiens 20 TGIF2 24 110 108 CCDS HistoryNCBI Gene:60436Re-query CCDS DB by CCDS ID:13278.1Re-query CCDS DB by GeneID:60436See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373872.9 ENSP00000362979.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373872.9Link to Ensembl Protein Viewer:ENSP00000362979.3Re-query CCDS DB by Nucleotide ID:ENST00000373872Re-query CCDS DB by Protein ID:ENSP00000362979
Original member Current member EBI ENST00000373874.6 ENSP00000362981.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373874.6Link to Ensembl Protein Viewer:ENSP00000362981.2Re-query CCDS DB by Nucleotide ID:ENST00000373874Re-query CCDS DB by Protein ID:ENSP00000362981
Original member Current member EBI ENST00000611732.4 ENSP00000481787.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611732.4Link to Ensembl Protein Viewer:ENSP00000481787.1Re-query CCDS DB by Nucleotide ID:ENST00000611732Re-query CCDS DB by Protein ID:ENSP00000481787
Original member Current member EBI ENST00000650844.1 ENSP00000498657.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650844.1Link to Ensembl Protein Viewer:ENSP00000498657.1Re-query CCDS DB by Nucleotide ID:ENST00000650844Re-query CCDS DB by Protein ID:ENSP00000498657
Original member Current member NCBI NM_001199513.2 NP_001186442.1 Accepted alive Link to Nucleotide Sequence:NM_001199513.2Link to Protein Sequence:NP_001186442.1Re-query CCDS DB by Nucleotide ID:NM_001199513Re-query CCDS DB by Protein ID:NP_001186442Link to BLAST:NP_001186442.1
Original member Current member NCBI NM_001199514.2 NP_001186443.1 Accepted alive Link to Nucleotide Sequence:NM_001199514.2Link to Protein Sequence:NP_001186443.1Re-query CCDS DB by Nucleotide ID:NM_001199514Re-query CCDS DB by Protein ID:NP_001186443Link to BLAST:NP_001186443.1
Original member Current member NCBI NM_001199515.2 NP_001186444.1 Accepted alive Link to Nucleotide Sequence:NM_001199515.2Link to Protein Sequence:NP_001186444.1Re-query CCDS DB by Nucleotide ID:NM_001199515Re-query CCDS DB by Protein ID:NP_001186444Link to BLAST:NP_001186444.1
Original member Current member NCBI NM_021809.7 NP_068581.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021809.7Link to Protein Sequence:NP_068581.1Re-query CCDS DB by Nucleotide ID:NM_021809Re-query CCDS DB by Protein ID:NP_068581Link to BLAST:NP_068581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186442.1 237 Q9GZN2-1 237 100% 0 0
NP_001186443.1 237 Q9GZN2-1 237 100% 0 0
NP_001186444.1 237 Q9GZN2-1 237 100% 0 0
NP_068581.1 237 Q9GZN2-1 237 100% 0 0

Chromosomal Locations for CCDS 13278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36578775 36578966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36590910 36591431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGTCGGACAGTGATCTAGGTGAGGACGAAGGCCTCCTCTCCCTGGCGGGCAAAAGGAAGCGCAGGGGGA
ACCTGCCCAAGGAGTCGGTGAAGATCCTCCGGGACTGGCTGTACTTGCACCGCTACAACGCCTACCCCTC
AGAGCAGGAGAAGCTGAGCCTTTCTGGACAGACCAACCTGTCAGTGCTGCAAATATGTAACTGGTTCATC
AATGCCCGGCGGCGGCTTCTCCCAGACATGCTTCGGAAGGATGGCAAAGACCCTAATCAGTTTACCATTT
CCCGCCGCGGGGGTAAGGCCTCAGATGTGGCCCTCCCCCGTGGCAGCAGCCCCTCAGTGCTGGCTGTGTC
TGTCCCAGCCCCCACCAATGTGCTCTCCCTGTCTGTGTGCTCCATGCCGCTTCACTCAGGCCAGGGGGAA
AAGCCAGCAGCCCCTTTCCCACGTGGGGAGCTGGAGTCTCCCAAGCCCCTGGTGACCCCTGGTAGCACAC
TTACTCTGCTGACCAGGGCTGAGGCTGGAAGCCCCACAGGTGGACTCTTCAACACGCCACCACCCACACC
CCCAGAGCAGGACAAAGAGGACTTCAGCAGCTTCCAGCTGCTGGTGGAGGTGGCGCTACAGAGGGCTGCT
GAGATGGAGCTTCAGAAGCAGCAGGACCCATCACTCCCATTACTGCACACTCCCATCCCTTTAGTCTCTG
AAAATCCCCAGTAG

Translation (237 aa):
MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNLSVLQICNWFI
NARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPAPTNVLSLSVCSMPLHSGQGE
KPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAA
EMELQKQQDPSLPLLHTPIPLVSENPQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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