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Report for CCDS13195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13195.1 Public Homo sapiens 20 CCM2L 24 110 108 CCDS HistoryNCBI Gene:140706Re-query CCDS DB by CCDS ID:13195.1Re-query CCDS DB by GeneID:140706See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13195.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262659.12 ENSP00000262659.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262659.12Link to Ensembl Protein Viewer:ENSP00000262659.8Re-query CCDS DB by Nucleotide ID:ENST00000262659Re-query CCDS DB by Protein ID:ENSP00000262659
Original member Current member NCBI NM_080625.4 NP_542192.2 Accepted alive Link to Nucleotide Sequence:NM_080625.4Link to Protein Sequence:NP_542192.2Re-query CCDS DB by Nucleotide ID:NM_080625Re-query CCDS DB by Protein ID:NP_542192Link to BLAST:NP_542192.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542192.2 433 Q9NUG4-2 433 100% 0 0

Chromosomal Locations for CCDS 13195.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 32010455 32010484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32014904 32015071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32017800 32017883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32017979 32018162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32018943 32019409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32022660 32022795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32028995 32029124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32029700 32029802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGAATATGAAGTCAAGAAAGGGAAGAAGGGCTTTGTATCCCCCATCCGAAGGCTGGTGTTCCCCAAGG
CCGGGCGCCGGGCAGCCTGTAGGAGCAGCGTGAGCCGCCGGCCCCTGCACTCGATGCCCCTTTATCCCCC
CGACTACCTCATCGACCCCCAGATTCTGCTGTGTGACTACCTGGAGAAAGAGGTCAAGTTCCTGGGCCAC
CTTACCTGGGTGACTTCCTCACTGAACCCCTCCAGTCGGGACGAGCTCCTGCAGCTGCTAGACACCGCCA
GGCAGCTGAAGGAGCTGCCGCTGAAGACCACGGCGGAGCAGGACAGCATCCTGAGCCTGTCTGCCCGCTG
CCTGCTGCTCACCTGGCGCGACAATGAAGAGCTCATTCTGCGAATCCCTACGCACGAGATCGCCGCCGCC
TCCTACCTGCAGGACGACGCGCTGCACCTGCTAGTGCTCAAGACCGGTCTGGGTGTGGACCCGGTGCCGG
CCGGCGTGGATGCCAGCCCAGGCGGCGCAGGACGCGACCCCGGCCCGCCAGGCGGGGCGCCCGAGAAGCG
GCGGGTGGGCACCGCGGAGCGGCGCCACACCATCTGCAGCCTGGACTGGCGGATGGGGTGGGGTGGGGGC
GCCGCGGAGGCCCGGGCCGGGGGAGGCGGCGGCGGCAGCTTGGAGCGCCAGCGCGCCGGGGCGCGGGCGT
CGGGCAGCTGGGAGCGACGGCAGACGTTCAGCGGCAGCTGGGAGCGGCGGCACGGAGGCGGCGGCGGCGG
CGGCGGCGCGGGAAAGCCGGGCGGTAGCTGGGAGCGGAGGCAGGCGGGCAGCGGCGGGGGAGGCAGCTGG
GAGCGGCGCCACCCCGGCCCCAACCCGCTCGACCCGCAGGACCCCAGCCCCGACGCCTACTGCAACCTGG
TCATCCTGGCTGTAGCCAACAGGGACGCTGCAGAGGAGTCCTGCGCACTCATCTGTCAGGTCTTCCAGAT
CATCTACGGGGACCAGAGTATTGAGTGTGTGGACCGGGCTGGCTACCACTACACATCCACACCTGAACGG
CCATGGCTCTGCAGCCGCATAATGGCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACC
TTCTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTCTGGGCTTGGAGCAGTTACAGGATTAC
ATGGTCACGTTGCGGAGTAAGCTGGGGCCCCTCGAGATCCAGCAGTTTGCGATGCTGCTGCGGGAGTACC
GGCTGGGGCTGCCCATCCAGGACTATTGCACAGGCCTGCTGA

Translation (433 aa):
MEYEVKKGKKGFVSPIRRLVFPKAGRRAACRSSVSRRPLHSMPLYPPDYLIDPQILLCDYLEKEVKFLGH
LTWVTSSLNPSSRDELLQLLDTARQLKELPLKTTAEQDSILSLSARCLLLTWRDNEELILRIPTHEIAAA
SYLQDDALHLLVLKTGLGVDPVPAGVDASPGGAGRDPGPPGGAPEKRRVGTAERRHTICSLDWRMGWGGG
AAEARAGGGGGGSLERQRAGARASGSWERRQTFSGSWERRHGGGGGGGGAGKPGGSWERRQAGSGGGGSW
ERRHPGPNPLDPQDPSPDAYCNLVILAVANRDAAEESCALICQVFQIIYGDQSIECVDRAGYHYTSTPER
PWLCSRIMAPRTPLKHVTAARPHLLSMAPTAAAATTAVWAWSSYRITWSRCGVSWGPSRSSSLRCCCGST
GWGCPSRTIAQAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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