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Report for CCDS4930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4930.1 Public Homo sapiens 6 PGK2 24 110 108 CCDS HistoryNCBI Gene:5232Re-query CCDS DB by CCDS ID:4930.1Re-query CCDS DB by GeneID:5232See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304801.6 ENSP00000305995.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304801.6Link to Ensembl Protein Viewer:ENSP00000305995.3Re-query CCDS DB by Nucleotide ID:ENST00000304801Re-query CCDS DB by Protein ID:ENSP00000305995
Original member Current member NCBI NM_138733.5 NP_620061.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138733.5Link to Protein Sequence:NP_620061.2Re-query CCDS DB by Nucleotide ID:NM_138733Re-query CCDS DB by Protein ID:NP_620061Link to BLAST:NP_620061.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620061.2 417 P07205 417 100% 0 0

Chromosomal Locations for CCDS 4930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49785934 49787187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGTCTCTTTCTAAGAAGTTGACTTTAGACAAACTGGATGTTAGAGGGAAGCGAGTCATCATGAGAGTAG
ACTTCAATGTTCCCATGAAGAAGAACCAGATTACAAACAACCAGAGGATCAAGGCTTCCATCCCAAGCAT
CAAGTACTGCCTGGACAATGGAGCCAAGGCAGTAGTTCTTATGAGTCATCTAGGTCGGCCTGATGGTGTT
CCCATGCCTGACAAATATTCCTTAGCACCTGTTGCTGTTGAGCTCAAATCCTTGCTGGGCAAGGATGTTC
TGTTCCTGAAGGACTGTGTAGGCGCAGAAGTGGAGAAAGCCTGTGCCAACCCAGCTCCTGGTTCAGTCAT
CCTGCTGGAGAACCTGCGCTTTCATGTGGAGGAAGAAGGGAAGGGCCAAGATCCCTCTGGAAAGAAGATT
AAAGCTGAGCCAGATAAAATAGAAGCCTTCCGAGCATCACTTTCCAAGCTAGGGGACGTCTATGTCAATG
ATGCTTTTGGCACTGCACACCGCGCTCATAGTTCCATGGTGGGAGTGAATCTGCCCCATAAAGCATCCGG
ATTCTTGATGAAGAAGGAACTAGATTACTTTGCTAAAGCCTTGGAAAACCCAGTGAGACCCTTTCTGGCT
ATACTTGGTGGAGCCAAAGTGGCAGACAAGATCCAACTTATCAAAAATATGCTGGACAAAGTCAATGAGA
TGATTATTGGTGGTGGAATGGCTTATACCTTCCTTAAGGTACTCAACAACATGGAGATTGGTGCTTCCCT
GTTTGATGAAGAGGGAGCCAAGATCGTTAAAGATATCATGGCCAAAGCACAAAAGAATGGTGTAAGGATT
ACTTTTCCTGTTGATTTTGTTACTGGGGACAAGTTTGACGAGAACGCTCAGGTTGGAAAAGCCACTGTAG
CATCTGGCATATCTCCTGGCTGGATGGGTTTGGACTGTGGTCCTGAGAGCAACAAGAATCATGCTCAAGT
TGTGGCTCAAGCAAGGCTAATTGTTTGGAATGGGCCGTTAGGAGTATTTGAATGGGATGCCTTTGCTAAG
GGAACCAAAGCCCTCATGGATGAAATTGTGAAAGCCACTTCCAAGGGCTGCATCACTGTTATAGGGGGTG
GAGACACTGCTACTTGCTGTGCCAAATGGAACACTGAAGATAAAGTCAGCCATGTCAGCACTGGAGGCGG
TGCCAGTCTAGAGCTTCTGGAAGGTAAAATCCTTCCTGGAGTAGAGGCCCTCAGCAACATGTAG

Translation (417 aa):
MSLSKKLTLDKLDVRGKRVIMRVDFNVPMKKNQITNNQRIKASIPSIKYCLDNGAKAVVLMSHLGRPDGV
PMPDKYSLAPVAVELKSLLGKDVLFLKDCVGAEVEKACANPAPGSVILLENLRFHVEEEGKGQDPSGKKI
KAEPDKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPHKASGFLMKKELDYFAKALENPVRPFLA
ILGGAKVADKIQLIKNMLDKVNEMIIGGGMAYTFLKVLNNMEIGASLFDEEGAKIVKDIMAKAQKNGVRI
TFPVDFVTGDKFDENAQVGKATVASGISPGWMGLDCGPESNKNHAQVVAQARLIVWNGPLGVFEWDAFAK
GTKALMDEIVKATSKGCITVIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVEALSNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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