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Report for CCDS24438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24438.1 Public Mus musculus 11 Fignl1 23 108 98 CCDS HistoryNCBI Gene:60530Re-query CCDS DB by CCDS ID:24438.1Re-query CCDS DB by GeneID:60530See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047689.10 ENSMUSP00000036932.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047689.10Link to Ensembl Protein Viewer:ENSMUSP00000036932.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047689Re-query CCDS DB by Protein ID:ENSMUSP00000036932
Original member Current member EBI ENSMUST00000109664.1 ENSMUSP00000105290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109664.1Link to Ensembl Protein Viewer:ENSMUSP00000105290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109664Re-query CCDS DB by Protein ID:ENSMUSP00000105290
Original member Current member EBI ENSMUST00000171938.1 ENSMUSP00000126340.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171938.1Link to Ensembl Protein Viewer:ENSMUSP00000126340.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171938Re-query CCDS DB by Protein ID:ENSMUSP00000126340
Original member Current member EBI ENSMUST00000171080.7 ENSMUSP00000127489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171080.7Link to Ensembl Protein Viewer:ENSMUSP00000127489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171080Re-query CCDS DB by Protein ID:ENSMUSP00000127489
Original member NCBI NM_001163359.1 NP_001156831.1 Updated not alive Link to Nucleotide Sequence:NM_001163359.1Link to Protein Sequence:NP_001156831.1Re-query CCDS DB by Nucleotide ID:NM_001163359Re-query CCDS DB by Protein ID:NP_001156831
Current member NCBI NM_001163359.2 NP_001156831.1 Accepted alive Link to Nucleotide Sequence:NM_001163359.2Link to Protein Sequence:NP_001156831.1Re-query CCDS DB by Nucleotide ID:NM_001163359Re-query CCDS DB by Protein ID:NP_001156831Link to BLAST:NP_001156831.1
Original member Current member NCBI NM_001163360.1 NP_001156832.1 Accepted alive Link to Nucleotide Sequence:NM_001163360.1Link to Protein Sequence:NP_001156832.1Re-query CCDS DB by Nucleotide ID:NM_001163360Re-query CCDS DB by Protein ID:NP_001156832Link to BLAST:NP_001156832.1
Original member NCBI NM_021891.3 NP_068691.2 Updated not alive Link to Nucleotide Sequence:NM_021891.3Link to Protein Sequence:NP_068691.2Re-query CCDS DB by Nucleotide ID:NM_021891Re-query CCDS DB by Protein ID:NP_068691
Current member NCBI NM_021891.4 NP_068691.2 Accepted alive Link to Nucleotide Sequence:NM_021891.4Link to Protein Sequence:NP_068691.2Re-query CCDS DB by Nucleotide ID:NM_021891Re-query CCDS DB by Protein ID:NP_068691Link to BLAST:NP_068691.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156831.1 683 Q8BPY9 683 100% 0 0
NP_001156832.1 683 Q8BPY9 683 100% 0 0
NP_068691.2 683 Q8BPY9 683 100% 0 0

Chromosomal Locations for CCDS 24438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 11801002 11803053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGGAGACGTCCAGCTCCATGTCTGTGGAGACGACTAGGTCTGTGCAGGTGGACGAATGGCAGAAGAATT
ACTGTGTGGTTACATCCAGCATATGTACACCAAAGCAGAAGGCCGATGCATACCGTGCACTACTACTGCA
TATTCAGTATGCATATGCCAACTCCGAGATCTCTCAGGTCTTTGCTACCAACCTGTTCAAAAGGTATACA
GAAAAATACTCTGCAATTATTGATTCTGACAATGTTGTAACTGGCTTGAATAACTATGCAGAGAGCATTT
TTGCTTTGGCAGGATCTCGACAGGCTGACAGTAACAAGTGGCAGTCTGGATTGTCAATAGATAATGTTTT
CAAAATGAGTTGTGTACAGGAGATGATGCAGGCTGGCAAGAAATTTGAAGAGTCTCTGTTGGAACCTGCT
GATGCATCAGTAGTCCTGTGTAAAGAGCCCACCGCCTTTGAGGTTCCTCAGCTTAGTGTTTGTGGAGGTT
CTGAAGACGCTGACATATTATCCAGTTCAGGTCATGACACAGATAAGACCCAAGCCATTCCAGGGAGCAG
TCTGAGATGTTCCCCTTTTCAGAGTGCTCGGCTGCCTAAGGAAACTAATACCACTAAGACATGCCTCACC
TCCTCAACATCTTTAGGTGAGTCAGCCACTGCAGCATTTCACATGACACCATTATTTGGAAACACCGAAA
AGGACACTCAAAGCTTTCCTAAAACCAGCACAGGACTAAATATGTTCTTATCTAATCTGTCTTGTGTTCC
TTCTGGCTGTGAAAACCCTCAAGAAAGGAAGGCTTTTAATGACTCTGACATCATTGACATACTTTCCAAT
CCAACACTGAACAAGGCTCCTAGTAAAACAGAAGACAGAGGCCGAAGGGAAGATAATAGCCTGCCTACCT
TTAAAACTGCAAAAGAACAATTATGGGTAGATCAAAAGAAAAAGGGCCATCAATCCCAGCATACATCTAA
ATCTTCTAATGGTGTTATGAAAAAGTCTCTGGGAGCTGGGAGGTCGAGAGGGATATTTGGCAAGTTTGTT
CCTCCTGTATCTAATAAGCAAGACGGAAGTGAGCAGCATGCCAAGAAGCACAAGTCTAGTAGGGCAGGGT
CTGCAGAACCAGCACACCTCACTGATGATTGTCTGAAGAACGTGGAGCCAAGGATGGTTGAACTTATTAT
GAATGAAATTATGGACCATGGGCCTCCAGTACATTGGGACGATATTGCTGGAGTAGAATTTGCCAAAGCC
ACAATAAAGGAAATCGTTGTGTGGCCCATGATGAGGCCAGATATCTTTACTGGATTGCGAGGGCCCCCTA
AAGGAATTCTGCTCTTTGGCCCTCCAGGGACTGGTAAAACTCTGATTGGCAAGTGCATTGCTAGCCAGTC
TGGAGCAACATTCTTCAGCATCTCTGCTTCATCGTTGACTTCTAAGTGGGTAGGTGAGGGAGAAAAAATG
GTCCGTGCACTGTTTGCTGTTGCCAGGTGTCAGCAGCCAGCTGTCATATTTATTGATGAAATTGATTCTT
TATTGTCTCAACGAGGAGATGGTGAACATGAATCTTCAAGAAGGATAAAAACGGAATTTTTAGTTCAGTT
AGATGGAGCAACCACATCTTCTGAAGACCGGATTCTTGTGGTGGGAGCTACAAATCGGCCCCAAGAGATT
GATGAAGCTGCCCGGAGAAGATTGGTGAAAAGACTTTATATTCCCCTCCCAGAAGCTTCAGCCAGGAAAC
AGATAGTAGGTAATCTAATGTCTAAGGAGCAATGTTGTCTCAGTGATGAAGAAACTGATCTGGTAGTGCA
GCAGTCTGATGGGTTTTCTGGCGCAGATATGACACAGCTTTGCAGAGAGGCTTCTCTTGGTCCTATTCGC
AGTTTGCACGCTGCTGACATTGCTACCATAAGTCCAGATCAAGTTCGACCAATAGCTTATATTGATTTTG
AAAATGCTTTTAAAACTGTGCGACCTACTGTATCTCCAAAAGACTTGGAGCTTTATGAAAACTGGAATGA
AACATTTGGTTGTGGAAAGTGA

Translation (683 aa):
METSSSMSVETTRSVQVDEWQKNYCVVTSSICTPKQKADAYRALLLHIQYAYANSEISQVFATNLFKRYT
EKYSAIIDSDNVVTGLNNYAESIFALAGSRQADSNKWQSGLSIDNVFKMSCVQEMMQAGKKFEESLLEPA
DASVVLCKEPTAFEVPQLSVCGGSEDADILSSSGHDTDKTQAIPGSSLRCSPFQSARLPKETNTTKTCLT
SSTSLGESATAAFHMTPLFGNTEKDTQSFPKTSTGLNMFLSNLSCVPSGCENPQERKAFNDSDIIDILSN
PTLNKAPSKTEDRGRREDNSLPTFKTAKEQLWVDQKKKGHQSQHTSKSSNGVMKKSLGAGRSRGIFGKFV
PPVSNKQDGSEQHAKKHKSSRAGSAEPAHLTDDCLKNVEPRMVELIMNEIMDHGPPVHWDDIAGVEFAKA
TIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKM
VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI
DEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIR
SLHAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYENWNETFGCGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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