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Report for CCDS73308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73308.1 Public Homo sapiens 11 SLC22A24 24 110 108 CCDS HistoryNCBI Gene:283238Re-query CCDS DB by CCDS ID:73308.1Re-query CCDS DB by GeneID:283238See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 73308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612278.4 ENSP00000480336.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612278.4Link to Ensembl Protein Viewer:ENSP00000480336.1Re-query CCDS DB by Nucleotide ID:ENST00000612278Re-query CCDS DB by Protein ID:ENSP00000480336
Original member Current member NCBI NM_001136506.2 NP_001129978.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136506.2Link to Protein Sequence:NP_001129978.2Re-query CCDS DB by Nucleotide ID:NM_001136506Re-query CCDS DB by Protein ID:NP_001129978Link to BLAST:NP_001129978.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129978.2 552 Q8N4F4-2 552 100% 0 0

Chromosomal Locations for CCDS 73308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63079940 63080000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63080920 63081123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63081558 63081666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63083243 63083457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63095991 63096106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63104175 63104298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63118912 63119080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63119181 63119335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63134665 63134768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63143378 63143779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGGCTTTGATGTGCTCCTGGATCAAGTGGGTGGCATGGGGAGATTCCAGATTTGTCTGATAGCTTTCT
TTTGCATCACCAACATCCTACTGTTCCCTAATATTGTGTTGGAGAACTTCACTGCATTCACCCCTAGTCA
TCGCTGCTGGGTCCCCCTCCTGGACAATGACACTGTGTCTGACAATGATACCGGGACCCTCAGCAAGGAT
GACCTCCTGAGAATCTCCATCCCACTGGACTCAAACCTGAGGCCACAGAAGTGTCAGCGCTTTATCCATC
CCCAGTGGCAGCTCCTTCACCTGAACGGGACCTTCCCCAACACAAATGAGCCAGACACGGAGCCCTGTGT
GGATGGCTGGGTGTACGACAGAAGCTCTTTCCTCTCCACCATCGTGACTGAGTGGGACCTGGTATGTGAA
TCTCAGTCACTAAAATCAATGGTTCAATCCCTATTTATGGCTGGGTCACTTCTGGGAGGTCTAATATATG
GCCATCTTTCAGACAGGGTTGGACGGAAGATCATATGCAAATTGTGTTTCCTCCAGCTGGCCATCTCTAA
CACCTGTGCGGCCTTCGCTCCCACCTTCCTTGTTTACTGCATACTGCGCTTCTTGGCAGGGTTCTCCACC
ATGACTATTTTGGGAAACACTTTTATTCTCAGCTTAGAGTGGACATTGCCCCGGTCACGATCTATGACAA
TAATGGTGCTATTATGTTCCTACAGTGTTGGGCAGATGCTCCTAGGAGGGCTGGCTTTTGCCATTCAGGA
CTGGCACATATTGCAACTGACTGTGTCTACACCCATAATTGTCCTCTTCTTGTCCTCTTGGAAGATGGTG
GAGTCTGCTCGGTGGCTGATTATCAACAATCAGCTAGATGAGGGCTTAAAGGAGCTTAGAAGAGTTGCAC
ACATAAATGGAAAAAAGAATACTGAAGAGACACTGACCACTGAGCTTGTGAGATCCACCATGAAGAAGGA
GTTGGATGCAGTCCGAATTAAAACATCCATTTTTTCCCTGTTCCGTGCACCCAAATTGCGAATGAGAGTC
TTCGGCCTGTGCTTTGTGAGATTCGCAATCACTGTACCCTTTTATGGCCTGATACTCAACTTGCAGCACT
TAGGGAGCAATGTCTCCCTGTTCCAGATTCTCTGTGGAGCTGTCACATTCACAGCCAGATGTGTTTCCCT
TTTGACACTGAATCATATGGGTCGTCGAATAAGCCAGATATTGTTCACGTTCCCGGTGGGACTTTTCATT
CTGGTCAACACCTTTTTGCCCCAAGAAATGCAGATCCTGCGTGTGGTTTTAGCAACTTTGGGAATTGGTA
GTGTTTCTGCTGCTAGCAACAGTGCTTCTGTCCACCACAACGAGCTCGTCCCCACCATATTGAGGTCAAC
AGTTGCAGGAATCAATGCAGTGTCCGGTAGGACTGGGGCAGCACTGGCTCCTCTGTTGATGACCTTAATG
GCGTATTCTCCCCACCTACCCTGGATTTCCTATGGAGTCTTCCCCATCCTTGCTGTCCCTGTTATCCTCC
TCCTTCCAGAAACCAGGGATCTACCTCTTCCTAACACCATCCAGGATGTGGAAAATGACAGAAAAGATTC
AAGAAACATAAAGCAGGAAGATACTTGCATGAAAGTAACACAGTTTTAA

Translation (552 aa):
MGFDVLLDQVGGMGRFQICLIAFFCITNILLFPNIVLENFTAFTPSHRCWVPLLDNDTVSDNDTGTLSKD
DLLRISIPLDSNLRPQKCQRFIHPQWQLLHLNGTFPNTNEPDTEPCVDGWVYDRSSFLSTIVTEWDLVCE
SQSLKSMVQSLFMAGSLLGGLIYGHLSDRVGRKIICKLCFLQLAISNTCAAFAPTFLVYCILRFLAGFST
MTILGNTFILSLEWTLPRSRSMTIMVLLCSYSVGQMLLGGLAFAIQDWHILQLTVSTPIIVLFLSSWKMV
ESARWLIINNQLDEGLKELRRVAHINGKKNTEETLTTELVRSTMKKELDAVRIKTSIFSLFRAPKLRMRV
FGLCFVRFAITVPFYGLILNLQHLGSNVSLFQILCGAVTFTARCVSLLTLNHMGRRISQILFTFPVGLFI
LVNTFLPQEMQILRVVLATLGIGSVSAASNSASVHHNELVPTILRSTVAGINAVSGRTGAALAPLLMTLM
AYSPHLPWISYGVFPILAVPVILLLPETRDLPLPNTIQDVENDRKDSRNIKQEDTCMKVTQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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