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Report for CCDS25287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25287.1 Public Mus musculus 11 Gip 23 108 98 CCDS HistoryNCBI Gene:14607Re-query CCDS DB by CCDS ID:25287.1Re-query CCDS DB by GeneID:14607See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103156.1 ENSMUSP00000099445.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103156.1Link to Ensembl Protein Viewer:ENSMUSP00000099445.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103156Re-query CCDS DB by Protein ID:ENSMUSP00000099445
Original member Current member EBI ENSMUST00000103157.9 ENSMUSP00000099446.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103157.9Link to Ensembl Protein Viewer:ENSMUSP00000099446.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103157Re-query CCDS DB by Protein ID:ENSMUSP00000099446
Original member Current member NCBI NM_008119.2 NP_032145.2 Accepted alive Link to Nucleotide Sequence:NM_008119.2Link to Protein Sequence:NP_032145.2Re-query CCDS DB by Nucleotide ID:NM_008119Re-query CCDS DB by Protein ID:NP_032145Link to BLAST:NP_032145.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032145.2 144 P48756 144 100% 0 0

Chromosomal Locations for CCDS 25287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96025376 96025461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96026624 96026770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96028686 96028775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96029488 96029589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96030707 96030716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGTGGCTTTGAAGACCTGCTCTCTGTTGCTGGTGCTCCTGTTCCTGGCTGTTGGGCTGGGAGAAAAAG
AAGAGGTTGAGTTCCGATCCCATGCTAAATTTGCTGGCCCTCGACCTCGAGGTCCAAGGTACGCAGAGGG
GACTTTCATCAGTGATTACAGCATCGCCATGGACAAGATCCGACAACAAGACTTCGTGAACTGGCTGCTG
GCACAGAGGGGGAAGAAGAGTGACTGGAAACACAACATCACCCAGAGAGAGGCCCGGGCTTTGGTGCTGG
CAGGGCAATCTCAGGGAAAGGAGGACAAAGAGGCACAGGAGAGCTCTTTGCCCAAGAGCCTCAGTGATGA
TGATGTGCTGAGAGACCTTCTGATTCAAGAGCTACTGGCCTGGATGGTGGACCAAACAGAGCTCTGCCGA
CTCAGGTCTCAGTGA

Translation (144 aa):
MVALKTCSLLLVLLFLAVGLGEKEEVEFRSHAKFAGPRPRGPRYAEGTFISDYSIAMDKIRQQDFVNWLL
AQRGKKSDWKHNITQREARALVLAGQSQGKEDKEAQESSLPKSLSDDDVLRDLLIQELLAWMVDQTELCR
LRSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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