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Report for CCDS50761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50761.1 Public Mus musculus 2 Bpifb9a 23 108 98 CCDS HistoryNCBI Gene:71425Re-query CCDS DB by CCDS ID:50761.1Re-query CCDS DB by GeneID:71425See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088924.6 ENSMUSP00000086314.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088924.6Link to Ensembl Protein Viewer:ENSMUSP00000086314.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088924Re-query CCDS DB by Protein ID:ENSMUSP00000086314
Original member NCBI NM_175167.3 NP_780376.2 Updated not alive Link to Nucleotide Sequence:NM_175167.3Link to Protein Sequence:NP_780376.2Re-query CCDS DB by Nucleotide ID:NM_175167Re-query CCDS DB by Protein ID:NP_780376
Current member NCBI NM_175167.4 NP_780376.2 Accepted alive Link to Nucleotide Sequence:NM_175167.4Link to Protein Sequence:NP_780376.2Re-query CCDS DB by Nucleotide ID:NM_175167Re-query CCDS DB by Protein ID:NP_780376Link to BLAST:NP_780376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780376.2 591 Q80XI7-1 591 100% 0 0

Chromosomal Locations for CCDS 50761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154259985 154260249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154261904 154262408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154262716 154262817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154263357 154263512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154264232 154264316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154264664 154264721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154265459 154265529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154266823 154266969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154267575 154267697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154267855 154267922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154268168 154268198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154269439 154269499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154270218 154270297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154271009 154271032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGTGGGTTCTCCAGGCCTTGGCCATCATGTTGAGCATCCAAGCGGGAACACTTGACCTGGTGGAAACAC
CCCCAGTGGTGGGCAATCTTCCTGTTGCCATGCCTGTTCCACTCAATCTCCCTGTAGGAGGCCTAAGTCC
TCCAGTCCTCAAAGGACCAGTCAACCATCAAATGTTACCTCCTAAAAGGCCTGTACCTCCACCCAAAGGT
GGCAAGTGTGCACCTGCAGCCAGATACTTCCTCTCCAGTGACAAACTCCATGACTACCTCATGAGCACAC
TGCCCCCACAGATTGAGGACATGGTGAAGTGTGATGAAGTTAACCTGGAAGGCATGCTTGCGGATGTGTT
GAACACTGTGGAGAGCTCTGACCTGCTCTCCCTCTTAGATGGCATTTCCCTCCTAAAAGGAGGAGAAGGG
GGAGGCCTTGGCATTGGTGGACTCCTAGGCAATGAAGGCAATGGGGATTCCTCAAAGCCCTCATCAGGCT
CCAAGGCCACTGGTGGTCTTGGCCAGCTAATCCCAGGGGGCATCCCAGGCACGGAGGCCCTGGGCGGCCT
ACTAAACCTCGGTGGAGACAAGAGCTCTGGAAAAGGGCTGCTGAATGGGGATGGGCTCTCCAAAATCAAG
AAGCCTCTTGAGGATGCAGTTGAAAATGTGAGCGGTATAAAAGATGCCATTCAGGAGAAAGTGAATGAAG
TGGTCCCAGATGGCGTCAAGGAGCCACTTAACGATGTGCTCAAGATGGATATCAAAGACACTCTGCTCGA
ACTGAAGGTCGGACAAGTAACTTTGGACGACATGGAGATAAACATGGAAGCTAATGGCATGCAAGTTCTC
TCCATGCTTACTGCTACCATAGATGGAAAAGGCGTGCTTGGACCAGTCATCAGCCTACTGCAGTTTGAAG
CTAAGATGGATGTAATGACGACAATTGCTGTTGCCTCCAACAACACCCAGTGTGTCAACCTTGATGCCCA
AGACACCCACATGCATGTCAAGGAAATGAAAATTCAGTTAGTGGAGACAGTCACAGGAAAAGTGCCTCTG
CCTGTGCCTCTGCCCTTGGATCAGATCATCCCAGCAATAGTGACAGCAAAAATAAATGAAAATCTGGAAA
AATCCAACTCCTGTGCCATTGTCCTCAATGACTTCAACAACTGCAAGAACAATACCGGCTTATTCAGTTA
CCAAGTTAATACTGCCAGGATCTCTCCAAAAGGACTTGTCATCCTCTACTGTGCTAAAGCCAATATAGGC
AACAAAACAGTACCTGTGCCTGGAGGTCGGCTGCCTCCAGATCCCAAAAATGCAAGCATTGCGGTAACCA
TTTCCTCCACAACACTGAAGACACTTGTAAAAGAAGTGGCCAAGAATAGCTCTGTGCAGATGGATGGCCT
GGAAGCACAAATCACCCACATAGCGTTTGCCTCCCAGGAAAACAATACGCTCAGAGTCGTGTATAAGGTT
GACATAACAAAGAACGGAGAGCACTTTGCCACTGGGGAAACGAAATTATTCATCTCCCATGGCAGCAAGA
TTTCAAACTCCACACTGATACCAGATGTCAAGCTCATAAGGTCTGAGCACAGTGTGGTGCCTCCTGAGGC
TAAGGAAGAAGTAGAAGGCATTTTGTCTGAAGTAGGAAAGGTGGCCTGGTCCAACTTCAATGAAACGTAT
AAAAAAATGAACATTCCTGTAGGTGTGTCTTCACATACTTTAAAGAACTCCGATGTCAAATTGATGAAAT
CAATTGACCTTCAGGCAGCAAGCTGA

Translation (591 aa):
MWVLQALAIMLSIQAGTLDLVETPPVVGNLPVAMPVPLNLPVGGLSPPVLKGPVNHQMLPPKRPVPPPKG
GKCAPAARYFLSSDKLHDYLMSTLPPQIEDMVKCDEVNLEGMLADVLNTVESSDLLSLLDGISLLKGGEG
GGLGIGGLLGNEGNGDSSKPSSGSKATGGLGQLIPGGIPGTEALGGLLNLGGDKSSGKGLLNGDGLSKIK
KPLEDAVENVSGIKDAIQEKVNEVVPDGVKEPLNDVLKMDIKDTLLELKVGQVTLDDMEINMEANGMQVL
SMLTATIDGKGVLGPVISLLQFEAKMDVMTTIAVASNNTQCVNLDAQDTHMHVKEMKIQLVETVTGKVPL
PVPLPLDQIIPAIVTAKINENLEKSNSCAIVLNDFNNCKNNTGLFSYQVNTARISPKGLVILYCAKANIG
NKTVPVPGGRLPPDPKNASIAVTISSTTLKTLVKEVAKNSSVQMDGLEAQITHIAFASQENNTLRVVYKV
DITKNGEHFATGETKLFISHGSKISNSTLIPDVKLIRSEHSVVPPEAKEEVEGILSEVGKVAWSNFNETY
KKMNIPVGVSSHTLKNSDVKLMKSIDLQAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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