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Report for CCDS21517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21517.1 Public Mus musculus 7 Folr1 23 108 98 CCDS HistoryNCBI Gene:14275Re-query CCDS DB by CCDS ID:21517.1Re-query CCDS DB by GeneID:14275See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106981.7 ENSMUSP00000102594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106981.7Link to Ensembl Protein Viewer:ENSMUSP00000102594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106981Re-query CCDS DB by Protein ID:ENSMUSP00000102594
Original member Current member EBI ENSMUST00000106982.7 ENSMUSP00000102595.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106982.7Link to Ensembl Protein Viewer:ENSMUSP00000102595.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106982Re-query CCDS DB by Protein ID:ENSMUSP00000102595
Original member Current member EBI ENSMUST00000106983.7 ENSMUSP00000102596.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106983.7Link to Ensembl Protein Viewer:ENSMUSP00000102596.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106983Re-query CCDS DB by Protein ID:ENSMUSP00000102596
Original member Current member EBI ENSMUST00000106985.7 ENSMUSP00000102598.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106985.7Link to Ensembl Protein Viewer:ENSMUSP00000102598.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106985Re-query CCDS DB by Protein ID:ENSMUSP00000102598
Original member Current member EBI ENSMUST00000106986.8 ENSMUSP00000102599.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106986.8Link to Ensembl Protein Viewer:ENSMUSP00000102599.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106986Re-query CCDS DB by Protein ID:ENSMUSP00000102599
Original member NCBI NM_001252552.1 NP_001239481.1 Updated not alive Link to Nucleotide Sequence:NM_001252552.1Link to Protein Sequence:NP_001239481.1Re-query CCDS DB by Nucleotide ID:NM_001252552Re-query CCDS DB by Protein ID:NP_001239481
Current member NCBI NM_001252552.2 NP_001239481.1 Accepted alive Link to Nucleotide Sequence:NM_001252552.2Link to Protein Sequence:NP_001239481.1Re-query CCDS DB by Nucleotide ID:NM_001252552Re-query CCDS DB by Protein ID:NP_001239481Link to BLAST:NP_001239481.1
Original member NCBI NM_001252553.1 NP_001239482.1 Updated not alive Link to Nucleotide Sequence:NM_001252553.1Link to Protein Sequence:NP_001239482.1Re-query CCDS DB by Nucleotide ID:NM_001252553Re-query CCDS DB by Protein ID:NP_001239482
Current member NCBI NM_001252553.2 NP_001239482.1 Accepted alive Link to Nucleotide Sequence:NM_001252553.2Link to Protein Sequence:NP_001239482.1Re-query CCDS DB by Nucleotide ID:NM_001252553Re-query CCDS DB by Protein ID:NP_001239482Link to BLAST:NP_001239482.1
Original member NCBI NM_001252554.1 NP_001239483.1 Updated not alive Link to Nucleotide Sequence:NM_001252554.1Link to Protein Sequence:NP_001239483.1Re-query CCDS DB by Nucleotide ID:NM_001252554Re-query CCDS DB by Protein ID:NP_001239483
Current member NCBI NM_001252554.2 NP_001239483.1 Accepted alive Link to Nucleotide Sequence:NM_001252554.2Link to Protein Sequence:NP_001239483.1Re-query CCDS DB by Nucleotide ID:NM_001252554Re-query CCDS DB by Protein ID:NP_001239483Link to BLAST:NP_001239483.1
Original member NCBI NM_008034.3 NP_032060.2 Updated not alive Link to Nucleotide Sequence:NM_008034.3Link to Protein Sequence:NP_032060.2Re-query CCDS DB by Nucleotide ID:NM_008034Re-query CCDS DB by Protein ID:NP_032060
Current member NCBI NM_008034.4 NP_032060.2 Accepted alive Link to Nucleotide Sequence:NM_008034.4Link to Protein Sequence:NP_032060.2Re-query CCDS DB by Nucleotide ID:NM_008034Re-query CCDS DB by Protein ID:NP_032060Link to BLAST:NP_032060.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239481.1 255 P35846 255 100% 0 0
NP_001239482.1 255 P35846 255 100% 0 0
NP_001239483.1 255 P35846 255 100% 0 0
NP_032060.2 255 P35846 255 100% 0 0

Chromosomal Locations for CCDS 21517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101858464 101858744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101859097 101859232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101859366 101859554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101863925 101864086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCTCACCTGATGACTGTGCAGTTGTTGCTCCTGGTGATGTGGATGGCCGAATGTGCTCAGTCCAGAG
CTACTCGGGCCAGGACTGAACTTCTCAATGTCTGCATGGATGCCAAACACCACAAAGAAAAACCGGGCCC
TGAGGACAATTTACACGACCAGTGCAGCCCCTGGAAGACGAATTCCTGCTGTTCCACGAACACAAGCCAG
GAAGCACATAAGGACATTTCCTACCTGTACCGGTTCAACTGGAACCACTGCGGAACTATGACATCGGAAT
GCAAACGGCACTTTATCCAAGACACCTGCCTCTATGAGTGTTCCCCGAACTTGGGACCCTGGATCCAGCA
GGTGGACCAGAGCTGGCGCAAAGAGCGGATCCTTGATGTTCCCCTGTGCAAAGAGGACTGTCAGCAGTGG
TGGGAGGACTGCCAGAGCTCTTTTACCTGCAAGAGCAATTGGCACAAGGGATGGAACTGGTCCTCGGGGC
ATAACGAGTGTCCTGTGGGAGCCTCCTGCCATCCCTTCACCTTCTACTTCCCCACATCTGCTGCTCTGTG
TGAGGAAATCTGGAGTCACTCCTACAAGCTCAGCAACTACAGTCGAGGGAGCGGCCGCTGCATTCAGATG
TGGTTCGACCCAGCCCAGGGCAACCCCAACGAGGAAGTGGCGAGGTTCTATGCCGAGGCCATGAGTGGAG
CTGGGTTTCATGGGACCTGGCCACTCTTGTGCAGCCTGTCCTTAGTGCTGCTCTGGGTGATCAGCTGA

Translation (255 aa):
MAHLMTVQLLLLVMWMAECAQSRATRARTELLNVCMDAKHHKEKPGPEDNLHDQCSPWKTNSCCSTNTSQ
EAHKDISYLYRFNWNHCGTMTSECKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERILDVPLCKEDCQQW
WEDCQSSFTCKSNWHKGWNWSSGHNECPVGASCHPFTFYFPTSAALCEEIWSHSYKLSNYSRGSGRCIQM
WFDPAQGNPNEEVARFYAEAMSGAGFHGTWPLLCSLSLVLLWVIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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