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Report for CCDS5404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5404.1 Public Homo sapiens 7 HOXA3 24 110 108 CCDS HistoryNCBI Gene:3200Re-query CCDS DB by CCDS ID:5404.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317201.7 ENSP00000324884.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317201.7Link to Ensembl Protein Viewer:ENSP00000324884.2Re-query CCDS DB by Nucleotide ID:ENST00000317201Re-query CCDS DB by Protein ID:ENSP00000324884
Original member Current member EBI ENST00000396352.8 ENSP00000379640.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396352.8Link to Ensembl Protein Viewer:ENSP00000379640.3Re-query CCDS DB by Nucleotide ID:ENST00000396352Re-query CCDS DB by Protein ID:ENSP00000379640
Original member Current member EBI ENST00000612286.5 ENSP00000484411.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612286.5Link to Ensembl Protein Viewer:ENSP00000484411.1Re-query CCDS DB by Nucleotide ID:ENST00000612286Re-query CCDS DB by Protein ID:ENSP00000484411
Original member Current member NCBI NM_001384335.1 NP_001371264.1 Accepted alive Link to Nucleotide Sequence:NM_001384335.1Link to Protein Sequence:NP_001371264.1Re-query CCDS DB by Nucleotide ID:NM_001384335Re-query CCDS DB by Protein ID:NP_001371264Link to BLAST:NP_001371264.1
Original member Current member NCBI NM_001384336.1 NP_001371265.1 Accepted alive Link to Nucleotide Sequence:NM_001384336.1Link to Protein Sequence:NP_001371265.1Re-query CCDS DB by Nucleotide ID:NM_001384336Re-query CCDS DB by Protein ID:NP_001371265Link to BLAST:NP_001371265.1
Original member Current member NCBI NM_001384337.1 NP_001371266.1 Accepted alive Link to Nucleotide Sequence:NM_001384337.1Link to Protein Sequence:NP_001371266.1Re-query CCDS DB by Nucleotide ID:NM_001384337Re-query CCDS DB by Protein ID:NP_001371266Link to BLAST:NP_001371266.1
Original member Current member NCBI NM_001384338.1 NP_001371267.1 Accepted alive Link to Nucleotide Sequence:NM_001384338.1Link to Protein Sequence:NP_001371267.1Re-query CCDS DB by Nucleotide ID:NM_001384338Re-query CCDS DB by Protein ID:NP_001371267Link to BLAST:NP_001371267.1
Original member Current member NCBI NM_001384339.1 NP_001371268.1 Accepted alive Link to Nucleotide Sequence:NM_001384339.1Link to Protein Sequence:NP_001371268.1Re-query CCDS DB by Nucleotide ID:NM_001384339Re-query CCDS DB by Protein ID:NP_001371268Link to BLAST:NP_001371268.1
Original member Current member NCBI NM_001384340.1 NP_001371269.1 Accepted alive Link to Nucleotide Sequence:NM_001384340.1Link to Protein Sequence:NP_001371269.1Re-query CCDS DB by Nucleotide ID:NM_001384340Re-query CCDS DB by Protein ID:NP_001371269Link to BLAST:NP_001371269.1
Original member Current member NCBI NM_001384341.1 NP_001371270.1 Accepted alive Link to Nucleotide Sequence:NM_001384341.1Link to Protein Sequence:NP_001371270.1Re-query CCDS DB by Nucleotide ID:NM_001384341Re-query CCDS DB by Protein ID:NP_001371270Link to BLAST:NP_001371270.1
Original member Current member NCBI NM_001384342.1 NP_001371271.1 Accepted alive Link to Nucleotide Sequence:NM_001384342.1Link to Protein Sequence:NP_001371271.1Re-query CCDS DB by Nucleotide ID:NM_001384342Re-query CCDS DB by Protein ID:NP_001371271Link to BLAST:NP_001371271.1
Original member Current member NCBI NM_001384343.1 NP_001371272.1 Accepted alive Link to Nucleotide Sequence:NM_001384343.1Link to Protein Sequence:NP_001371272.1Re-query CCDS DB by Nucleotide ID:NM_001384343Re-query CCDS DB by Protein ID:NP_001371272Link to BLAST:NP_001371272.1
Original member Current member NCBI NM_001384344.1 NP_001371273.1 Accepted alive Link to Nucleotide Sequence:NM_001384344.1Link to Protein Sequence:NP_001371273.1Re-query CCDS DB by Nucleotide ID:NM_001384344Re-query CCDS DB by Protein ID:NP_001371273Link to BLAST:NP_001371273.1
Original member Current member NCBI NM_001384345.1 NP_001371274.1 Accepted alive Link to Nucleotide Sequence:NM_001384345.1Link to Protein Sequence:NP_001371274.1Re-query CCDS DB by Nucleotide ID:NM_001384345Re-query CCDS DB by Protein ID:NP_001371274Link to BLAST:NP_001371274.1
Original member Current member NCBI NM_001384346.1 NP_001371275.1 Accepted alive Link to Nucleotide Sequence:NM_001384346.1Link to Protein Sequence:NP_001371275.1Re-query CCDS DB by Nucleotide ID:NM_001384346Re-query CCDS DB by Protein ID:NP_001371275Link to BLAST:NP_001371275.1
Original member Current member NCBI NM_030661.5 NP_109377.1 Accepted alive Link to Nucleotide Sequence:NM_030661.5Link to Protein Sequence:NP_109377.1Re-query CCDS DB by Nucleotide ID:NM_030661Re-query CCDS DB by Protein ID:NP_109377Link to BLAST:NP_109377.1
Original member Current member NCBI NM_153631.3 NP_705895.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153631.3Link to Protein Sequence:NP_705895.1Re-query CCDS DB by Nucleotide ID:NM_153631Re-query CCDS DB by Protein ID:NP_705895Link to BLAST:NP_705895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371264.1 443 O43365 443 100% 0 0
NP_001371265.1 443 O43365 443 100% 0 0
NP_001371266.1 443 O43365 443 100% 0 0
NP_001371267.1 443 O43365 443 100% 0 0
NP_001371268.1 443 O43365 443 100% 0 0
NP_001371269.1 443 O43365 443 100% 0 0
NP_001371270.1 443 O43365 443 100% 0 0
NP_001371271.1 443 O43365 443 100% 0 0
NP_001371272.1 443 O43365 443 100% 0 0
NP_001371273.1 443 O43365 443 100% 0 0
NP_001371274.1 443 O43365 443 100% 0 0
NP_001371275.1 443 O43365 443 100% 0 0
NP_109377.1 443 O43365 443 100% 0 0
NP_705895.1 443 O43365 443 100% 0 0

Chromosomal Locations for CCDS 5404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27107915 27108720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27110115 27110640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCAAAAAGCGACCTACTACGACAGCTCGGCGATCTACGGTGGCTACCCCTACCAGGCAGCCAACGGGT
TCGCTTATAATGCCAATCAGCAGCCGTACCCGGCGTCCGCCGCTTTGGGCGCCGACGGCGAGTACCACCG
ACCCGCCTGCTCCCTCCAGTCTCCCTCCAGCGCCGGGGGCCACCCCAAGGCACACGAACTGAGTGAGGCG
TGCCTGCGCACCCTGAGCGCCCCACCTAGCCAGCCTCCAAGCCTGGGAGAGCCGCCCCTGCACCCGCCGC
CGCCCCAGGCCGCGCCCCCTGCCCCACAGCCGCCTCAGCCCGCACCTCAGCCCCCTGCACCTACCCCTGC
CGCGCCCCCGCCTCCCTCTTCTGCCTCCCCTCCTCAGAATGCCAGCAACAACCCTACCCCTGCCAACGCG
GCCAAGAGCCCCCTGCTCAACTCACCCACAGTGGCCAAACAAATCTTCCCCTGGATGAAAGAGTCTCGAC
AAAACACAAAGCAGAAAACCAGCAGCTCCAGCTCAGGCGAAAGCTGCGCTGGCGACAAGAGCCCGCCGGG
GCAGGCTTCGTCCAAGCGCGCGCGCACGGCCTACACGAGCGCGCAGCTGGTGGAGCTGGAGAAAGAGTTC
CACTTCAACCGCTACCTGTGCCGGCCGCGCCGGGTGGAGATGGCCAATCTGCTGAACCTCACTGAGCGCC
AGATCAAGATCTGGTTCCAGAATCGCCGCATGAAGTACAAAAAGGATCAGAAGGGCAAGGGCATGCTAAC
GTCATCGGGGGGCCAGTCTCCAAGTCGCAGCCCCGTGCCCCCCGGAGCCGGTGGCTATCTGAACTCTATG
CATTCGCTGGTCAACAGCGTCCCGTATGAGCCCCAGTCGCCCCCGCCCTTCTCCAAGCCCCCCCAGGGTA
CCTACGGGCTGCCCCCCGCCTCCTACCCTGCGTCCCTGCCCAGCTGCGCACCCCCGCCACCCCCACAGAA
GCGCTACACGGCGGCAGGGGCGGGCGCAGGGGGCACCCCCGACTATGACCCGCACGCTCATGGCCTGCAG
GGCAACGGCAGCTATGGGACCCCACACATACAGGGAAGCCCCGTCTTCGTGGGGGGCAGCTATGTGGAGC
CCATGAGCAACTCCGGGCCAGCCCTCTTTGGTCTAACTCACCTCCCCCACGCTGCCTCGGGCGCCATGGA
CTATGGGGGTGCCGGGCCGCTGGGCAGCGGCCACCACCACGGGCCGGGGCCTGGGGAGCCGCACCCCACC
TACACGGACCTTACCGGCCACCATCCTTCTCAGGGAAGAATTCAGGAAGCACCCAAGCTCACCCACCTGT
GA

Translation (443 aa):
MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEA
CLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANA
AKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEF
HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSM
HSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQ
GNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
YTDLTGHHPSQGRIQEAPKLTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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