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Report for CCDS56784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56784.1 Public Mus musculus 11 Clec10a 23 108 98 CCDS HistoryNCBI Gene:17312Re-query CCDS DB by CCDS ID:56784.1Re-query CCDS DB by GeneID:17312See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000327.12 ENSMUSP00000000327.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000327.12Link to Ensembl Protein Viewer:ENSMUSP00000000327.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000327Re-query CCDS DB by Protein ID:ENSMUSP00000000327
Original member Current member NCBI NM_001204252.1 NP_001191181.1 Accepted alive Link to Nucleotide Sequence:NM_001204252.1Link to Protein Sequence:NP_001191181.1Re-query CCDS DB by Nucleotide ID:NM_001204252Re-query CCDS DB by Protein ID:NP_001191181Link to BLAST:NP_001191181.1

Chromosomal Locations for CCDS 56784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70167944 70168004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70168583 70168696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169129 70169224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169308 70169379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169459 70169530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169736 70169822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70169926 70170077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70170160 70170266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70170418 70170574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGATATACGAAAACCTCCAGAACTCAAGGATCGAGGAGAAAACCCAAGAGCCTGGTAAAGCAGCTCCTT
CCCAGTCCTTCCTGTGGCGCATCCTCTCTTGGACCCACCTCCTCCTGTTCTCCCTGGGCCTCAGCCTCCT
GCTGTTGGTGGTCGTCTCCGTGATTGGATCCCAAAATTCCCAGTTAAGGAGGGACCTAGGCACCCTGAGA
GCCACTTTAGACAACACCACCTCCAAGATAAAGGCTGAATTCCAGTCCCTGGACTCCAGGGCTGACAGCT
TCGAAAAAGGGATCAGTTCTCTGAAAGTGGATGTGGAGGATCACAGGCAGGAACTGCAGGCAGGCCGAGA
CTTGAGCCAGAAGGTGACTTCTCTGGAGAGCACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGATCTG
TCTGATTTAACCGACCATGTGCAACAGCTGAGGAAGGACTTGAAGGCCCTGACGTGCCAGCTGGCCAACC
TCAAGAACAACGGCTCGGAAGTGGCCTGCTGCCCGCTTCACTGGACGGAGCATGAAGGCAGCTGCTATTG
GTTCTCTGAGTCTGAGAAGTCGTGGCCTGAAGCTGACAAGTACTGCCGGCTGGAGAATTCTCACCTGGTG
GTGGTCAACTCCCTGGAGGAGCAGAATTTTCTACAGAATCGCTTAGCCAATGTGGTTAGTTGGATCGGCC
TAACGGACCAAAACGGGCCCTGGCGATGGGTGGATGGGACCGACTTTGAGAAAGGCTTTAAGAACTGGGC
CCCACTGCAGCCAGATAACTGGTTCGGACACGGACTGGGAGGAGGTGAGGACTGTGCCCACATCACTACA
GGTGGTCCCTGGAATGATGATGTCTGCCAGAGAACCTTCCGCTGGATCTGTGAGATGAAGCTGGCCAAGG
AGAGCTAG

Translation (305 aa):
MIYENLQNSRIEEKTQEPGKAAPSQSFLWRILSWTHLLLFSLGLSLLLLVVVSVIGSQNSQLRRDLGTLR
ATLDNTTSKIKAEFQSLDSRADSFEKGISSLKVDVEDHRQELQAGRDLSQKVTSLESTVEKREQALKTDL
SDLTDHVQQLRKDLKALTCQLANLKNNGSEVACCPLHWTEHEGSCYWFSESEKSWPEADKYCRLENSHLV
VVNSLEEQNFLQNRLANVVSWIGLTDQNGPWRWVDGTDFEKGFKNWAPLQPDNWFGHGLGGGEDCAHITT
GGPWNDDVCQRTFRWICEMKLAKES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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