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Report for CCDS3692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3692.1 Public Homo sapiens 4 PITX2 24 110 108 CCDS HistoryNCBI Gene:5308Re-query CCDS DB by CCDS ID:3692.1Re-query CCDS DB by GeneID:5308See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3692.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354925.6 ENSP00000347004.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354925.6Link to Ensembl Protein Viewer:ENSP00000347004.2Re-query CCDS DB by Nucleotide ID:ENST00000354925Re-query CCDS DB by Protein ID:ENSP00000347004
Original member Current member EBI ENST00000394595.8 ENSP00000378095.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394595.8Link to Ensembl Protein Viewer:ENSP00000378095.4Re-query CCDS DB by Nucleotide ID:ENST00000394595Re-query CCDS DB by Protein ID:ENSP00000378095
Original member Current member NCBI NM_001204397.2 NP_001191326.1 Accepted alive Link to Nucleotide Sequence:NM_001204397.2Link to Protein Sequence:NP_001191326.1Re-query CCDS DB by Nucleotide ID:NM_001204397Re-query CCDS DB by Protein ID:NP_001191326Link to BLAST:NP_001191326.1
Original member Current member NCBI NM_001204398.1 NP_001191327.1 Accepted alive Link to Nucleotide Sequence:NM_001204398.1Link to Protein Sequence:NP_001191327.1Re-query CCDS DB by Nucleotide ID:NM_001204398Re-query CCDS DB by Protein ID:NP_001191327Link to BLAST:NP_001191327.1
Original member Current member NCBI NM_153426.3 NP_700475.1 Accepted alive Link to Nucleotide Sequence:NM_153426.3Link to Protein Sequence:NP_700475.1Re-query CCDS DB by Nucleotide ID:NM_153426Re-query CCDS DB by Protein ID:NP_700475Link to BLAST:NP_700475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191326.1 317 Q99697-1 317 100% 0 0
NP_001191327.1 317 Q99697-1 317 100% 0 0
NP_700475.1 317 Q99697-1 317 100% 0 0

Chromosomal Locations for CCDS 3692.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 110618125 110618688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110621164 110621369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110632343 110632480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110632953 110632998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGAGACCAACTGCCGCAAACTGGTGTCGGCGTGTGTGCAATTAGGCGTGCAGCCGGCGGCCGTTGAAT
GTCTCTTCTCCAAAGACTCCGAAATCAAAAAGGTCGAGTTCACGGACTCTCCTGAGAGCCGAAAAGAGGC
AGCCAGCAGCAAGTTCTTCCCGCGGCAGCATCCTGGCGCCAATGAGAAAGATAAAAGCCAGCAGGGGAAG
AATGAGGACGTGGGCGCCGAGGACCCGTCTAAGAAGAAGCGGCAAAGGCGGCAGCGGACTCACTTTACCA
GCCAGCAGCTCCAGGAGCTGGAGGCCACTTTCCAGAGGAACCGCTACCCGGACATGTCCACACGCGAAGA
AATCGCTGTGTGGACCAACCTTACGGAAGCCCGAGTCCGGGTTTGGTTCAAGAATCGTCGGGCCAAATGG
AGAAAGAGGGAGCGCAACCAGCAGGCCGAGCTATGCAAGAATGGCTTCGGGCCGCAGTTCAATGGGCTCA
TGCAGCCCTACGACGACATGTACCCAGGCTATTCCTACAACAACTGGGCCGCCAAGGGCCTTACATCCGC
CTCCCTATCCACCAAGAGCTTCCCCTTCTTCAACTCTATGAACGTCAACCCCCTGTCATCACAGAGCATG
TTTTCCCCACCCAACTCTATCTCGTCCATGAGCATGTCGTCCAGCATGGTGCCCTCAGCAGTGACAGGCG
TCCCGGGCTCCAGTCTCAACAGCCTGAATAACTTGAACAACCTGAGTAGCCCGTCGCTGAATTCCGCGGT
GCCGACGCCTGCCTGTCCTTACGCGCCGCCGACTCCTCCGTATGTTTATAGGGACACGTGTAACTCGAGC
CTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTCCAGCTTCGGCTACGCCAGCGTGCAGAACCCGGCCT
CCAACCTGAGTGCTTGCCAGTATGCAGTGGACCGGCCCGTGTGA

Translation (317 aa):
METNCRKLVSACVQLGVQPAAVECLFSKDSEIKKVEFTDSPESRKEAASSKFFPRQHPGANEKDKSQQGK
NEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKW
RKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSM
FSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSS
LASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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