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Report for CCDS56201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56201.1 Public Homo sapiens 20 NPEPL1 24 110 108 CCDS HistoryNCBI Gene:79716Re-query CCDS DB by CCDS ID:56201.1Re-query CCDS DB by GeneID:79716See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525817.5 ENSP00000437112.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525817.5Link to Ensembl Protein Viewer:ENSP00000437112.1Re-query CCDS DB by Nucleotide ID:ENST00000525817Re-query CCDS DB by Protein ID:ENSP00000437112
Original member Current member NCBI NM_001204873.2 NP_001191802.1 Accepted alive Link to Nucleotide Sequence:NM_001204873.2Link to Protein Sequence:NP_001191802.1Re-query CCDS DB by Nucleotide ID:NM_001204873Re-query CCDS DB by Protein ID:NP_001191802Link to BLAST:NP_001191802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191802.1 475 Q8NDH3-5 475 100% 0 0

Chromosomal Locations for CCDS 56201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 58691775 58691780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58693737 58693922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58694422 58694592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58698684 58698773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58699197 58699278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58701016 58701158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58707123 58707200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58712479 58712579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58713420 58713543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58713917 58714093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58714560 58714670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58715168 58715326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAGCTCTGGCAGGCTGCCCTGAGCACGCTCAACCCCAACCCCACGGACAGCTGTCCCCTCTACCTGA
ACTACGCCACCGTGGCTGCCCTGCCCTGCAGGGTGAGCCGGCACAACAGCCCCTCGGCCGCCCACTTCAT
CACGCGGCTGGTGCGGACCTGCCTGCCGCCCGGAGCGCATCGCTGCATTGTGATGGTCTGCGAGCAGCCG
GAGGTCTTTGCTTCCGCCTGTGCCCTGGCCCGGGCCTTCCCGCTGTTCACCCACCGCTCAGGTGCCTCTC
GGCGCTTGGAGAAGAAGACGGTCACCGTGGAGTTTTTCCTGGTGGGACAAGACAACGGGCCGGTGGAGGT
GTCCACATTGCAGTGCTTAGCGAATGCCACAGACGGCGTGCGGCTAGCAGCCCGCATCGTGGACACACCC
TGCAATGAGATGAACACCGACACCTTCCTCGAGGAGATTAACAAAGTTGGAAAGGAGCTGGGGATCATCC
CAACCATCATCCGGGATGAGGAACTGAAGACGAGAGGATTTGGAGGAATCTATGGGGTTGGCAAAGCCGC
CCTGCATCCCCCAGCCCTGGCCGTCCTCAGCCACACCCCAGATGGAGCCACGCAGACCATCGCCTGGGTG
GGCAAAGGCATCGTCTATGACACTGGAGGCCTCAGCATCAAAGGGAAGACTACCATGCCGGGGATGAAGC
GAGACTGCGGGGGTGCTGCGGCCGTCCTGGGGGCCTTCAGAGCCGCAATCAAGCAGGGTTTCAAAGACAA
CCTCCACGCTGTGTTCTGCTTGGCTGAGAACTCGGTGGGGCCCAATGCGACAAGGCCAGATGACATCCAC
CTGCTGTACTCAGGGAAGACGGTGGAAATCAACAACACGGATGCCGAGGGCAGGCTGGTGCTGGCAGATG
GCGTGTCCTATGCTTGCAAGGACCTGGGGGCCGACATCATCCTGGACATGGCCACCCTGACCGGGGCTCA
GGGCATTGCCACAGGGAAGTACCACGCCGCGGTGCTCACCAACAGCGCTGAGTGGGAGGCCGCCTGTGTG
AAGGCGGGCAGGAAGTGTGGGGACCTGGTGCACCCGCTGGTCTACTGCCCCGAGCTGCACTTCAGCGAGT
TCACCTCAGCTGTGGCGGACATGAAGAACTCAGTGGCGGACCGAGACAACAGCCCCAGCTCCTGTGCTGG
CCTCTTCATCGCCTCACACATCGGCTTCGACTGGCCCGGAGTCTGGGTCCACCTGGACATTGCTGCACCG
GTGCATGCTGGTGAGCGAGCCACAGGCTTCGGTGTGGCCCTCCTGCTGGCGCTCTTCGGCCGTGCCTCTG
AGGACCCTCTGCTGAACCTGGTGTCCCCACTGGGCTGTGAGGTGGATGTCGAGGAGGGGGACCTGGGGAG
GGACTCCAAGAGACGCAGGCTTGTGTGA

Translation (475 aa):
MELWQAALSTLNPNPTDSCPLYLNYATVAALPCRVSRHNSPSAAHFITRLVRTCLPPGAHRCIVMVCEQP
EVFASACALARAFPLFTHRSGASRRLEKKTVTVEFFLVGQDNGPVEVSTLQCLANATDGVRLAARIVDTP
CNEMNTDTFLEEINKVGKELGIIPTIIRDEELKTRGFGGIYGVGKAALHPPALAVLSHTPDGATQTIAWV
GKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLGAFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIH
LLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACV
KAGRKCGDLVHPLVYCPELHFSEFTSAVADMKNSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIAAP
VHAGERATGFGVALLLALFGRASEDPLLNLVSPLGCEVDVEEGDLGRDSKRRRLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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