NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12759.1 Public Homo sapiens 19 HRC 24 110 108 CCDS HistoryNCBI Gene:3270Re-query CCDS DB by CCDS ID:12759.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12759.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252825.9 ENSP00000252825.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252825.9Link to Ensembl Protein Viewer:ENSP00000252825.3Re-query CCDS DB by Nucleotide ID:ENST00000252825Re-query CCDS DB by Protein ID:ENSP00000252825
Original member Current member NCBI NM_002152.3 NP_002143.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002152.3Link to Protein Sequence:NP_002143.1Re-query CCDS DB by Nucleotide ID:NM_002152Re-query CCDS DB by Protein ID:NP_002143Link to BLAST:NP_002143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002143.1 699 P23327 699 100% 0 0

Chromosomal Locations for CCDS 12759.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49151296 49151332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49151517 49151553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49152004 49152058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49152310 49152378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49153261 49153331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49153407 49155237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGGGCCACCATAGGCCATGGCTGCACGCTTCTGTCCTCTGGGCTGGGGTGGCCAGCCTGCTCCTCCCCC
CGGCCATGACCCAGCAGCTCAGAGGGGATGGGCTAGGCTTCAGAAACCGGAACAACAGCACTGGAGTCGC
CGGGCTCTCCGAGGAGGCATCAGCAGAGCTTCGCCACCACCTCCACAGCCCTAGAGACCATCCAGATGAG
AACAAGGATGTTTCCACAGAGAATGGGCATCATTTCTGGAGCCACCCAGACCGTGAAAAGGAGGATGAAG
ATGTCTCCAAGGAATATGGGCACCTACTCCCAGGCCACAGGTCCCAAGACCACAAAGTCGGAGATGAGGG
TGTCTCAGGTGAGGAGGTCTTTGCAGAGCATGGTGGGCAGGCCCGTGGGCACAGAGGCCACGGGAGTGAA
GACACGGAAGACTCAGCTGAGCACAGGCACCACCTCCCCAGCCACAGGAGCCACAGCCATCAAGACGAGG
ATGAGGATGAAGTTGTGTCCAGTGAGCATCACCATCATATCCTCAGGCATGGACACCGAGGCCATGATGG
GGAAGATGATGAAGGAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGCCTCCACTGAGTATGGA
CACCAGGCCCACAGGCACCGAGGCCATGGGAGTGAAGAGGATGAGGATGTCTCAGATGGACACCATCATC
ATGGCCCCAGCCACAGGCACCAAGGCCATGAAGAAGATGACGATGATGATGATGATGATGATGATGATGA
TGATGATGATGATGTCTCCATTGAATATAGACACCAGGCTCACAGGCACCAAGGCCACGGGATTGAAGAG
GATGAAGATGTCTCAGATGGACACCATCATCGCGACCCCAGCCACAGGCACCGAAGCCATGAAGAAGATG
ACAATGATGATGATGATGTCTCCACTGAGTATGGACACCAGGCCCACAGGCACCAAGACCACAGAAAGGA
AGAGGTTGAGGCTGTCTCAGGTGAACACCACCATCATGTCCCTGACCACAGGCACCAAGGCCACAGAGAC
GAGGAAGAAGATGAGGATGTGTCCACTGAACGTTGGCACCAGGGTCCCCAACATGTCCACCATGGCCTTG
TAGATGAGGAAGAGGAAGAAGAGGAGATCACAGTCCAGTTCGGCCACTATGTTGCAAGCCACCAACCTCG
AGGCCACAAGAGTGATGAAGAGGACTTCCAAGATGAGTATAAAACAGAAGTCCCTCACCATCACCACCAC
AGAGTCCCCAGGGAGGAAGATGAGGAGGTCTCTGCTGAGCTTGGCCACCAGGCCCCCAGCCACAGGCAAA
GCCACCAAGATGAAGAAACTGGCCATGGTCAAAGAGGGTCCATCAAAGAGATGAGCCATCACCCCCCAGG
ACACACAGTGGTCAAGGATAGAAGCCATTTGAGGAAGGATGATTCTGAGGAGGAAAAGGAGAAGGAAGAG
GACCCCGGCTCCCATGAGGAAGACGATGAAAGTTCAGAGCAGGGAGAGAAAGGCACCCATCATGGCAGCC
GGGACCAGGAAGATGAGGAGGATGAGGAGGAAGGTCATGGCCTCAGCCTGAACCAGGAGGAGGAAGAAGA
GGAAGACAAGGAGGAGGAGGAGGAGGAAGAAGACGAGGAGAGGAGGGAAGAGAGGGCTGAGGTTGGGGCC
CCACTGAGCCCAGACCACAGCGAGGAGGAAGAGGAGGAGGAGGAGGGGCTGGAGGAAGATGAGCCCCGCT
TCACCATCATCCCCAACCCACTGGACAGGAGAGAGGAGGCTGGAGGTGCCTCCAGCGAGGAGGAAAGCGG
TGAGGACACAGGTCCACAGGATGCTCAGGAGTATGGGAACTACCAGCCAGGGTCCCTGTGTGGCTACTGC
TCCTTCTGCAATCGATGCACTGAATGTGAGAGCTGTCACTGTGATGAGGAGAACATGGGTGAGCACTGCG
ACCAGTGCCAGCACTGTCAGTTCTGCTATCTCTGCCCGCTGGTCTGCGAAACGGTCTGCGCTCCAGGAAG
CTACGTTGACTATTTCTCCTCGTCCCTTTATCAGGCCCTGGCAGACATGCTGGAAACGCCGGAACCCTGA

Translation (699 aa):
MGHHRPWLHASVLWAGVASLLLPPAMTQQLRGDGLGFRNRNNSTGVAGLSEEASAELRHHLHSPRDHPDE
NKDVSTENGHHFWSHPDREKEDEDVSKEYGHLLPGHRSQDHKVGDEGVSGEEVFAEHGGQARGHRGHGSE
DTEDSAEHRHHLPSHRSHSHQDEDEDEVVSSEHHHHILRHGHRGHDGEDDEGEEEEEEEEEEEEASTEYG
HQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDDDDDDDDDVSIEYRHQAHRHQGHGIEE
DEDVSDGHHHRDPSHRHRSHEEDDNDDDDVSTEYGHQAHRHQDHRKEEVEAVSGEHHHHVPDHRHQGHRD
EEEDEDVSTERWHQGPQHVHHGLVDEEEEEEEITVQFGHYVASHQPRGHKSDEEDFQDEYKTEVPHHHHH
RVPREEDEEVSAELGHQAPSHRQSHQDEETGHGQRGSIKEMSHHPPGHTVVKDRSHLRKDDSEEEKEKEE
DPGSHEEDDESSEQGEKGTHHGSRDQEDEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGA
PLSPDHSEEEEEEEEGLEEDEPRFTIIPNPLDRREEAGGASSEEESGEDTGPQDAQEYGNYQPGSLCGYC
SFCNRCTECESCHCDEENMGEHCDQCQHCQFCYLCPLVCETVCAPGSYVDYFSSSLYQALADMLETPEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH