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Report for CCDS10998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10998.1 Public Homo sapiens 17 NXN 24 110 108 CCDS HistoryNCBI Gene:64359Re-query CCDS DB by CCDS ID:10998.1Re-query CCDS DB by GeneID:64359See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336868.8 ENSP00000337443.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336868.8Link to Ensembl Protein Viewer:ENSP00000337443.3Re-query CCDS DB by Nucleotide ID:ENST00000336868Re-query CCDS DB by Protein ID:ENSP00000337443
Original member Current member NCBI NM_022463.5 NP_071908.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022463.5Link to Protein Sequence:NP_071908.2Re-query CCDS DB by Nucleotide ID:NM_022463Re-query CCDS DB by Protein ID:NP_071908Link to BLAST:NP_071908.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071908.2 435 Q6DKJ4-1 435 100% 0 0

Chromosomal Locations for CCDS 10998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 800949 801131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 803682 803806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 805068 805247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 819439 819545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 822357 822457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 823632 823765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 825961 826078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 979319 979678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGTCGGGCTTCCTGGAGGAGCTGCTCGGCGAGAAGCTGGTGACGGGCGGCGGCGAGGAGGTGGACGTGC
ACTCGCTGGGCGCCCGCGGCATCTCGCTGCTGGGTCTCTACTTCGGCTGCAGCCTCAGCGCCCCCTGCGC
GCAGCTCAGCGCCAGCCTGGCCGCCTTCTACGGGCGCCTGCGGGGGGACGCGGCGGCCGGGCCGGGGCCG
GGAGCGGGGGCCGGGGCGGCGGCGGAGCCCGAGCCGCGGCGGCGCCTGGAGATCGTCTTCGTGTCCTCGG
ACCAGGACCAGCGGCAGTGGCAGGACTTCGTGCGGGACATGCCGTGGCTGGCGCTGCCCTACAAGGAGAA
GCACAGGAAGCTCAAACTTTGGAACAAATACCGAATTTCCAACATTCCATCACTAATATTCCTCGACGCC
ACCACTGGGAAGGTTGTGTGCAGGAACGGGCTGCTGGTGATCCGAGATGACCCAGAAGGTCTGGAGTTCC
CCTGGGGACCGAAACCCTTCAGGGAAGTCATTGCAGGGCCCTTGCTTAGAAACAATGGGCAGTCTCTGGA
GAGCAGCAGCCTGGAGGGGTCTCACGTGGGCGTCTATTTCTCCGCACATTGGTGTCCGCCCTGCCGAAGC
CTCACCCGGGTCCTGGTGGAATCCTACCGGAAGATCAAGGAGGCAGGCCAGAACTTCGAGATCATCTTCG
TTAGTGCAGACAGGTCGGAGGAGTCCTTCAAACAGTACTTCAGTGAGATGCCCTGGCTCGCCGTCCCCTA
CACGGATGAGGCCCGGCGGTCGCGCCTCAACCGGCTGTACGGAATCCAAGGCATCCCCACGCTCATCATG
CTGGACCCGCAGGGCGAGGTGATCACGCGGCAGGGGCGGGTGGAGGTGCTGAACGACGAGGACTGCCGGG
AGTTCCCCTGGCACCCCAAGCCCGTGCTGGAGCTCTCCGACTCCAACGCCGCGCAGCTTAACGAGGGCCC
CTGCCTCGTCCTTTTTGTAGATTCTGAGGATGACGGAGAGTCCGAGGCGGCCAAGCAGCTGATTCAGCCG
ATAGCTGAGAAAATCATTGCCAAGTACAAAGCCAAAGAGGAGGAGGCACCCCTTCTGTTCTTCGTAGCCG
GGGAGGATGACATGACTGACTCCCTGCGAGATTACACCAACCTGCCTGAGGCTGCCCCTTTGCTCACCAT
CCTGGACATGTCAGCCCGGGCCAAGTACGTGATGGACGTGGAGGAGATCACCCCCGCCATCGTGGAGGCC
TTTGTGAATGACTTCCTAGCAGAGAAGCTCAAACCGGAGCCCATCTAG

Translation (435 aa):
MSGFLEELLGEKLVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGP
GAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNIPSLIFLDA
TTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRS
LTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIM
LDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLIQP
IAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEA
FVNDFLAEKLKPEPI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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