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Report for CCDS44609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44609.1 Public Homo sapiens 11 CTNND1 24 110 108 CCDS HistoryNCBI Gene:1500Re-query CCDS DB by CCDS ID:44609.1Re-query CCDS DB by GeneID:1500See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44609.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426142.6 ENSP00000409930.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426142.6Link to Ensembl Protein Viewer:ENSP00000409930.2Re-query CCDS DB by Nucleotide ID:ENST00000426142Re-query CCDS DB by Protein ID:ENSP00000409930
Original member Current member EBI ENST00000532463.5 ENSP00000432075.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532463.5Link to Ensembl Protein Viewer:ENSP00000432075.1Re-query CCDS DB by Nucleotide ID:ENST00000532463Re-query CCDS DB by Protein ID:ENSP00000432075
Original member Current member EBI ENST00000532245.5 ENSP00000434017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532245.5Link to Ensembl Protein Viewer:ENSP00000434017.1Re-query CCDS DB by Nucleotide ID:ENST00000532245Re-query CCDS DB by Protein ID:ENSP00000434017
Original member Current member EBI ENST00000529986.5 ENSP00000437156.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529986.5Link to Ensembl Protein Viewer:ENSP00000437156.1Re-query CCDS DB by Nucleotide ID:ENST00000529986Re-query CCDS DB by Protein ID:ENSP00000437156
Original member Current member NCBI NM_001085467.2 NP_001078936.1 Accepted alive Link to Nucleotide Sequence:NM_001085467.2Link to Protein Sequence:NP_001078936.1Re-query CCDS DB by Nucleotide ID:NM_001085467Re-query CCDS DB by Protein ID:NP_001078936Link to BLAST:NP_001078936.1
Original member Current member NCBI NM_001085468.2 NP_001078937.1 Accepted alive Link to Nucleotide Sequence:NM_001085468.2Link to Protein Sequence:NP_001078937.1Re-query CCDS DB by Nucleotide ID:NM_001085468Re-query CCDS DB by Protein ID:NP_001078937Link to BLAST:NP_001078937.1
Original member Current member NCBI NM_001085469.2 NP_001078938.1 Accepted alive Link to Nucleotide Sequence:NM_001085469.2Link to Protein Sequence:NP_001078938.1Re-query CCDS DB by Nucleotide ID:NM_001085469Re-query CCDS DB by Protein ID:NP_001078938Link to BLAST:NP_001078938.1
Original member Current member NCBI NM_001206890.2 NP_001193819.1 Accepted alive Link to Nucleotide Sequence:NM_001206890.2Link to Protein Sequence:NP_001193819.1Re-query CCDS DB by Nucleotide ID:NM_001206890Re-query CCDS DB by Protein ID:NP_001193819Link to BLAST:NP_001193819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078936.1 832 O60716-21 832 100% 0 0
NP_001078937.1 832 O60716-21 832 100% 0 0
NP_001078938.1 832 O60716-21 832 100% 0 0
NP_001193819.1 832 O60716-21 832 100% 0 0

Chromosomal Locations for CCDS 44609.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57795613 57795729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57796457 57796992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57801733 57802196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57803621 57803804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57804663 57804780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57805882 57806035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57806915 57806983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57808165 57808292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57808390 57808540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57809274 57809466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57810109 57810223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57811399 57811486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57814311 57814373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57815394 57815500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57816297 57816308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAGGATCCTGAGGGAGCCATGTCTGTAGTCT
CTGTGGAGACCTCAGATGATGGGACCACTCGGCGCACAGAGACCACGGTCAAGAAAGTAGTGAAGACTGT
GACAACACGGACAGTACAGCCAGTCGCTATGGGACCAGACGGGTTGCCTGTGGATGCTTCATCAGTTTCT
AACAACTATATCCAGACTTTGGGTCGTGATTTCCGCAAGAATGGCAATGGGGGACCTGGTCCCTATGTGG
GGCAAGCTGGCACTGCTACCCTTCCTAGGAACTTCCACTACCCTCCTGATGGTTATAGTCGCCACTATGA
AGATGGTTATCCAGGTGGCAGTGATAACTATGGCAGTCTGTCCCGGGTGACCCGCATTGAGGAGCGGTAT
AGGCCCAGCATGGAAGGCTACCGGGCACCTAGTAGACAGGATGTGTATGGGCCCCAACCCCAGGTTCGGG
TAGGTGGGAGCAGCGTGGATCTGCATCGCTTTCATCCAGAGCCTTATGGGCTAGAGGATGACCAGCGTAG
TATGGGCTATGATGACCTGGATTATGGTATGATGTCTGATTATGGCACTGCCCGTCGGACTGGGACACCC
TCTGACCCTCGTCGGCGCCTCAGGAGCTATGAAGACATGATTGGTGAGGAGGTGCCATCGGATCAATACT
ACTGGGCTCCTTTGGCCCAGCATGAGCGAGGAAGTTTAGCAAGCTTGGATAGCCTGCGCAAAGGAGGGCC
TCCACCTCCTAATTGGAGACAGCCAGAGCTGCCAGAGGTGATCGCCATGCTTGGATTCCGCTTGGATGCT
GTCAAGTCCAATGCAGCTGCATACCTGCAACACTTATGCTACCGCAATGACAAGGTGAAGACTGACGTGC
GGAAGCTCAAGGGCATCCCAGTACTGGTGGGATTGTTAGACCATCCCAAAAAGGAAGTGCACCTTGGAGC
CTGTGGAGCTCTCAAGAATATCTCTTTTGGACGTGACCAGGATAACAAGATTGCCATAAAAAACTGTGAT
GGTGTGCCTGCCCTTGTGCGATTGCTTCGAAAGGCTCGTGATATGGACCTTACTGAAGTTATTACCGGAA
CCCTGTGGAATCTTTCATCCCATGACTCAATCAAAATGGAGATTGTGGACCATGCACTGCATGCCTTGAC
AGATGAAGTGATCATTCCTCATTCTGGTTGGGAGCGGGAACCTAATGAAGACTGTAAGCCACGCCACATT
GAGTGGGAATCGGTGCTCACCAACACAGCTGGCTGCCTTAGGAATGTAAGCTCAGAGAGGAGTGAAGCTC
GCCGGAAACTTCGGGAATGTGATGGTTTAGTTGATGCCCTCATTTTCATTGTTCAGGCTGAGATTGGGCA
GAAGGATTCAGACAGCAAGCTTGTAGAGAACTGTGTTTGCCTTCTTCGGAACTTATCATATCAAGTTCAC
CGGGAGATCCCACAGGCAGAGCGTTACCAAGAGGCAGCTCCCAATGTTGCCAACAATACTGGGCCACATG
CTGCCAGTTGCTTTGGGGCCAAGAAGGGCAAAGGGAAAAAACCTATAGAGGATCCAGCAAACGATACAGT
GGATTTCCCTAAAAGAACGAGTCCAGCTCGAGGCTATGAGCTCTTATTTCAGCCAGAGGTGGTTCGGATA
TACATCTCACTTCTTAAGGAGAGCAAGACTCCTGCCATCCTAGAAGCCTCAGCTGGAGCTATCCAGAACT
TGTGTGCTGGGCGCTGGACGTATGGTCGATACATCCGCTCTGCTCTGCGTCAAGAGAAGGCTCTTTCTGC
CATAGCTGACCTCCTGACTAATGAACATGAACGGGTGGTGAAAGCTGCATCTGGAGCACTGAGAAACCTG
GCTGTGGATGCTCGCAACAAAGAATTAATTGGTAAACATGCTATTCCTAACTTGGTAAAGAATCTGCCAG
GAGGACAGCAGAACTCCTCTTGGAATTTCTCTGAGGACACTGTCATCTCTATTTTGAACACTATCAACGA
GGTTATCGCTGAGAACTTGGAGGCTGCCAAAAAGCTTCGAGAGACACAGGGTATTGAGAAGCTGGTGTTG
ATCAACAAATCAGGGAACCGCTCAGAAAAAGAAGTTCGAGCAGCAGCACTTGTATTACAGACAATCTGGG
GATATAAGGAACTGCGGAAGCCACTGGAAAAAGAAGGATGGAAGAAATCAGACTTTCAGGTGAATCTAAA
CAATGCTTCCCGAAGCCAGAGCAGTCATTCATATGATGATAGTACTCTCCCTCTCATTGACCGGAACCAA
AAATCAGATAAGAAACCTGATCGGGAAGAAATTCAGATGAGCAATATGGGATCAAACACAAAATCACTAG
ATAACAACTATTCCACACCAAATGAGAGAGGAGACCACAATAGAACACTGGATCGATCGGGGGATCTAGG
CGACATGGAGCCATTGAAGGGAACAACACCCTTGATGCAGAAGATTTAG

Translation (832 aa):
MQEPGQIVETYTEEDPEGAMSVVSVETSDDGTTRRTETTVKKVVKTVTTRTVQPVAMGPDGLPVDASSVS
NNYIQTLGRDFRKNGNGGPGPYVGQAGTATLPRNFHYPPDGYSRHYEDGYPGGSDNYGSLSRVTRIEERY
RPSMEGYRAPSRQDVYGPQPQVRVGGSSVDLHRFHPEPYGLEDDQRSMGYDDLDYGMMSDYGTARRTGTP
SDPRRRLRSYEDMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDA
VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCD
GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI
EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH
REIPQAERYQEAAPNVANNTGPHAASCFGAKKGKGKKPIEDPANDTVDFPKRTSPARGYELLFQPEVVRI
YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNL
AVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVL
INKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQ
KSDKKPDREEIQMSNMGSNTKSLDNNYSTPNERGDHNRTLDRSGDLGDMEPLKGTTPLMQKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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