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Report for CCDS55693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55693.1 Public Homo sapiens 1 CATSPERE 24 110 108 CCDS HistoryNCBI Gene:257044Re-query CCDS DB by CCDS ID:55693.1Re-query CCDS DB by GeneID:257044See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55693.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366531.7 ENSP00000355489.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366531.7Link to Ensembl Protein Viewer:ENSP00000355489.3Re-query CCDS DB by Nucleotide ID:ENST00000366531Re-query CCDS DB by Protein ID:ENSP00000355489
Original member Current member NCBI NM_001242340.2 NP_001229269.1 Accepted alive Link to Nucleotide Sequence:NM_001242340.2Link to Protein Sequence:NP_001229269.1Re-query CCDS DB by Nucleotide ID:NM_001242340Re-query CCDS DB by Protein ID:NP_001229269Link to BLAST:NP_001229269.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229269.1 800 Q5SY80-3 800 100% 0 0

Chromosomal Locations for CCDS 55693.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 244518616 244518698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244552322 244552814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244560668 244561145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244572330 244572772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244581796 244581854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244583864 244583939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244588482 244588534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244591681 244591731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244593395 244593428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244593499 244593578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244605695 244605794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244610240 244610326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244617529 244617686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244635489 244635542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244639928 244640081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2403 nt):
ATGGCCACATTGGGACAGAAGCCTGTCATACATACAGTTCTGAAGAGAAAAGTTTATTCTTCAAATGAGA
AAATGAGAAGGGGGACCTGGCGTATTGTAGTACCAATGACAAAAGATGATGCACTAAAGGAGATTAGAGG
AAACCAAGTTACTTTTCAGGATTGCTTTATTGCAGATTTTCTTATTCTGTTGACTTTTCCTTTGTTGACC
ATACCTGAAATTCCTGGTTATTTACCAATCTCCTCACCACGTGGTAGTCAATTAATGGCTTCCTGGGATG
CTTGTGTAGTTGCATCTGCTGTTTTGGTGACAGATATGGAGACCTTTCACACAACTGATTCATTCAAATC
TTGGACCAGAATCAGAGTGCCTCCAGACATTCTGAGTGATGATGAAAGACGGAGTGTGGCTCATGTGATC
TTATCGCGGGATGGAATCGTTTTTCTTATAAATGGTGTTCTTTACATAAAGAGTTTTCGTGGATTTATAA
GACTGGGAGGAATTGTAAATCTTCCTGATGGTGGAATTACTGGCATTTCATCAAGAAAATGGTGTTGGGT
CAATTATTTATTAAAGGCTAAAGGAAGAAGAAGCACCTTTGCAGTCTGGACAGAAAATGAAATTTACCTC
GGATCCATTCTTCTTAAGTTTGCCAGATTAGTAACTACCACAGAACTGAAAAACATCCTAAGTCTATCGG
TGACTGCTACTCTGACCATAGACAGGGTTGAGTATACAGGACACCCTCTGGAGATTGCTGTGTTTTTAAA
TTATTGCACTGTATGTAACGTCACCAAAAAGATTTTCTTAGTGATATATAATGAAGATACAAAACAGTGG
GTTTCCCAAGACTTTACATTAGATGCCCCTATTGACAGTGTTACCATGCCACATTTTACATTTTCAGCAC
TGCCAGGATTACTGCTATGGAACAAGCATAGTATCTACTATTGTTACCATAATTTCACCTTTACTGGGAT
TTTACAGACACCTGCAGGACATGGAAATCTATCAATGCTATCAAATGACAGCATTATTCATGAAGTTTTC
ATAGATTATTATGGAGATATTTTGGTAAAAATGGAAAATAATGTAATATTTTATTCCAAGATTAATACTA
GAGATGCAGTAAAGCTGCATTTATGGACAAATTACACAACAAGAGCATTCATTTTCTTAAGTACATCTGG
TCAAACATATTTCCTGTATGCTTTGGATGATGGCACAATACAAATACAGGACTATCCCTTACATCTGGAA
GCACAAAGTATAGCTTTCACAACAAAAGACAAATGCCCATACATGGCATTTCATAACAATGTTGCTCATG
TTTTTTACTTTTTGGACAAGGGAGAGGCTCTGACAGTTTGGACTCAGATCGTCTATCCAGAAAACACTGG
TCTGTATGTTATTGTGGAATCTTATGGCCCAAAAATATTACAAGAGAGTCATGAGATTTCCTTTGAAGCT
GCCTTTGGATACTGCACCAAAACTCTGACACTAACATTTTATCAGAATGTAGATTATGAGAGAATATCTG
ATTACTTTGAGACACAAGACAAGCACACGGGTCTTGTGCTGGTTCAGTTTCGACCTAGTGAATATTCAAA
AGCATGTCCAATAGCCCAAAAGGTGTTCCAAATAGCTGTTGGCTGTGATGATAAAAAATTCATTGCAATT
AAAGGATTTAGTAAAAAAGGATGTCATCACCATGATTTTTCATACGTGATTGAAAAGTCATATCTGAGGC
ATCAGCCATCGAAAAACTTGAGAGTAAGGTATATTTGGGGAGAATATGGCTGCCCTCTGAGGCTTGACTT
CACAGAAAAGTTTCAACCTGTGGTTCAACTATTTGATGATAATGGCTATGTTAAAGACGTTGAAGCAAAT
TTCATAGTGTGGGAAATACACGGCAGGGATGACTATAGCTTTAATAATACTATGGCACAGAGTGGTTGTT
TACATGAAGCACAGACATGGAAGTCAATGATTGAACTTAACAAGCACCTCCCACTAGAAGAAGTCTGGGG
ACCTGAGAACTATAAACACTGTTTTTCTTATGCTATTGGAAAACCAGGAGACTTAAATCAACCATACGAG
ATTATCAACAGTTCTAATGGTAACCATATATTTTGGCCCATGGGCCATTCTGGAATGTATGTATTTCGTG
TGAAGATCCTGGATCCAAACTATAGTTTCTGTAACCTAACAGCTATGTTTGCAATAGAGACATTTGGACT
GATTCCCAGTCCAAGTGTCTACCTGGTAGCTTCTTTCCTCTTCGTCCTGATGCTGCTCTTCTTCACTATT
CTTGTTTTGAGCTACTTTCGGTACATGAGGATTTATAGACGATATATTTATGAACCACTTCACAAACCTC
AAAGAAAACGTAAGAAGAATTAG

Translation (800 aa):
MATLGQKPVIHTVLKRKVYSSNEKMRRGTWRIVVPMTKDDALKEIRGNQVTFQDCFIADFLILLTFPLLT
IPEIPGYLPISSPRGSQLMASWDACVVASAVLVTDMETFHTTDSFKSWTRIRVPPDILSDDERRSVAHVI
LSRDGIVFLINGVLYIKSFRGFIRLGGIVNLPDGGITGISSRKWCWVNYLLKAKGRRSTFAVWTENEIYL
GSILLKFARLVTTTELKNILSLSVTATLTIDRVEYTGHPLEIAVFLNYCTVCNVTKKIFLVIYNEDTKQW
VSQDFTLDAPIDSVTMPHFTFSALPGLLLWNKHSIYYCYHNFTFTGILQTPAGHGNLSMLSNDSIIHEVF
IDYYGDILVKMENNVIFYSKINTRDAVKLHLWTNYTTRAFIFLSTSGQTYFLYALDDGTIQIQDYPLHLE
AQSIAFTTKDKCPYMAFHNNVAHVFYFLDKGEALTVWTQIVYPENTGLYVIVESYGPKILQESHEISFEA
AFGYCTKTLTLTFYQNVDYERISDYFETQDKHTGLVLVQFRPSEYSKACPIAQKVFQIAVGCDDKKFIAI
KGFSKKGCHHHDFSYVIEKSYLRHQPSKNLRVRYIWGEYGCPLRLDFTEKFQPVVQLFDDNGYVKDVEAN
FIVWEIHGRDDYSFNNTMAQSGCLHEAQTWKSMIELNKHLPLEEVWGPENYKHCFSYAIGKPGDLNQPYE
IINSSNGNHIFWPMGHSGMYVFRVKILDPNYSFCNLTAMFAIETFGLIPSPSVYLVASFLFVLMLLFFTI
LVLSYFRYMRIYRRYIYEPLHKPQRKRKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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