NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17995.1 Public Mus musculus 4 Ttpa 23 108 98 CCDS HistoryNCBI Gene:50500Re-query CCDS DB by CCDS ID:17995.1Re-query CCDS DB by GeneID:50500See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098244.1 ENSMUSP00000095845.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098244.1Link to Ensembl Protein Viewer:ENSMUSP00000095845.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098244Re-query CCDS DB by Protein ID:ENSMUSP00000095845
Original member NCBI NM_015767.4 NP_056582.1 Updated not alive Link to Nucleotide Sequence:NM_015767.4Link to Protein Sequence:NP_056582.1Re-query CCDS DB by Nucleotide ID:NM_015767Re-query CCDS DB by Protein ID:NP_056582
NCBI NM_015767.5 NP_056582.1 Updated not alive Link to Nucleotide Sequence:NM_015767.5Link to Protein Sequence:NP_056582.1Re-query CCDS DB by Nucleotide ID:NM_015767Re-query CCDS DB by Protein ID:NP_056582
Current member NCBI NM_015767.6 NP_056582.1 Accepted alive Link to Nucleotide Sequence:NM_015767.6Link to Protein Sequence:NP_056582.1Re-query CCDS DB by Nucleotide ID:NM_015767Re-query CCDS DB by Protein ID:NP_056582Link to BLAST:NP_056582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056582.1 278 Q8BWP5 278 100% 0 0

Chromosomal Locations for CCDS 17995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 20008440 20008643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20014631 20014784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20021192 20021385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20023785 20023895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20028408 20028581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGCAGAGATGCGGCCGGGGCCATTGGTTGGGAAACAGCTCAACGAGCTGCCCGACCACTCGCCGCTGC
TCCAGCCCGGCCTGGCGGAGCTCAGGCGCCGGGTGCAGGAGGCAGGCGTCCCGCAGACCCCGCAGCCTCT
CACAGACGCTTTCCTGCTGCGCTTCCTGCGCGCCCGGGATTTCGATCTGGATCTGGCCTGGCGCTTAATG
AAAAACTATTATAAATGGCGAGCAGAATGCCCAGAATTAAGTGCAGATCTACGCCCTAGAAGTATCCTTG
GACTTCTGAAAGCTGGCTACCATGGCGTGCTCAGGTCCCGGGATTCTACTGGCAGTAGAGTTCTCATTTA
CAGAATTGCATACTGGGACCCAAAAGTTTTTACAGCTTATGATGTATTTCGTGTAAGTCTGATCACATCA
GAGCTCATTGTACAGGAGGTGGAAACTCAACGCAATGGAGTTAAAGCTATATTTGACCTGGAAGGCTGGC
AGGTTTCTCATGCTTTCCAAATTACCCCATCTGTAGCCAAGAAGATTGCTGCTGTACTTACAGATTCCTT
TCCACTGAAAGTTCGTGGGATCCATTTGATAAATGAGCCAGTCATTTTCCATGCTGTCTTCTCCATGATT
AAACCATTTCTGACTGAAAAGATTAAGGACCGGATTCATCTGCACGGGAACAACTACAAATCAAGCATGC
TTCAGCACTTCCCAGACATTCTTCCTCGGGAATATGGCGGTAAAGAGTTCTCCATGGAGGATATTTGTCA
GGAGTGGACAAATTTTATAATGAAGTCTGAAGATTATCTCAGCAGCATTTCTGAGACCATCCAATGA

Translation (278 aa):
MAEMRPGPLVGKQLNELPDHSPLLQPGLAELRRRVQEAGVPQTPQPLTDAFLLRFLRARDFDLDLAWRLM
KNYYKWRAECPELSADLRPRSILGLLKAGYHGVLRSRDSTGSRVLIYRIAYWDPKVFTAYDVFRVSLITS
ELIVQEVETQRNGVKAIFDLEGWQVSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI
KPFLTEKIKDRIHLHGNNYKSSMLQHFPDILPREYGGKEFSMEDICQEWTNFIMKSEDYLSSISETIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH