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Report for CCDS56045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56045.1 Public Homo sapiens 17 MFSD11 24 110 108 CCDS HistoryNCBI Gene:79157Re-query CCDS DB by CCDS ID:56045.1Re-query CCDS DB by GeneID:79157See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56045.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355954.7 ENSP00000348225.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355954.7Link to Ensembl Protein Viewer:ENSP00000348225.3Re-query CCDS DB by Nucleotide ID:ENST00000355954Re-query CCDS DB by Protein ID:ENSP00000348225
Original member Current member EBI ENST00000593181.5 ENSP00000466782.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000593181.5Link to Ensembl Protein Viewer:ENSP00000466782.1Re-query CCDS DB by Nucleotide ID:ENST00000593181Re-query CCDS DB by Protein ID:ENSP00000466782
Original member Current member NCBI NM_001242536.3 NP_001229465.1 Accepted alive Link to Nucleotide Sequence:NM_001242536.3Link to Protein Sequence:NP_001229465.1Re-query CCDS DB by Nucleotide ID:NM_001242536Re-query CCDS DB by Protein ID:NP_001229465Link to BLAST:NP_001229465.1
Original member Current member NCBI NM_001242537.3 NP_001229466.1 Accepted alive Link to Nucleotide Sequence:NM_001242537.3Link to Protein Sequence:NP_001229466.1Re-query CCDS DB by Nucleotide ID:NM_001242537Re-query CCDS DB by Protein ID:NP_001229466Link to BLAST:NP_001229466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229465.1 397 O43934-2 397 100% 0 0
NP_001229466.1 397 O43934-2 397 100% 0 0

Chromosomal Locations for CCDS 56045.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76738353 76738448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76738938 76738993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76740957 76741064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76741969 76742048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76744322 76744466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76754047 76754087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76767386 76767451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76769746 76769871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76774997 76775171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76776406 76776541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76778188 76778352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGTCCCCGGAATCTAAAAAGCTTTTCAACATCATTATTTTAGGAGTTGCCTTTATGTTTATGTTCACTG
CCTTTCAAACTTGTGGAAATGTGGCGCAAACTGTCATCAGGAGCTTAAATAGGACAGATTTTCACGGCAG
TGGATATACCAGCATGGCTATTATCTATGGAGTGTTCTCTGCTTCAAATTTGATTACACCGTCAGTGGTT
GCCATTGTAGGACCTCAACTCTCTATGTTTGCCAGTGGTTTATTTTACAGCATGTACATTGCCGTTTTCA
TCCAGCCTTTCCCGTGGTCCTTCTACACAGCCTCTGTTTTCATTGGAATTGCTGCTGCTGAGAGTGACCG
AAGAACAGTGTTTATTGCCCTAACGGTGATTAGCCTTGTGGGGACAGTTCTATTCTTTCTCATTCGGAAA
CCAGATTCTGAAAATGTCCTAGGAGAAGATGAGTCTTCTGATGACCAGGACATGGAAGTCAACGAGTCTG
CCCAGAACAATCTGACAAAGGCAGTAGATGCTTTTAAAAAGTCTTTTAAGTTATGTGTCACCAAGGAGAT
GCTCCTTCTTAGTATTACAACTGCTTATACAGGTCTGGAATTAACTTTCTTCTCTGGTGTATATGGAACC
TGTATTGGTGCTACAAATAAATTTGGAGCAGAAGAGAAAAGCCTTATTGGACTTTCTGGCATTTTCATCG
GCATTGGAGAAATTTTAGGTGGAAGCCTCTTCGGCCTGCTGAGCAAGAACAATCGTTTTGGTAGAAATCC
AGTTGTGCTGTTGGGCATCCTGGTGCACTTCATAGCTTTTTATCTAATATTTCTCAACATGCCTGGAGAT
GCCCCGATTGCTCCTGTTAAAGGAACTGACAGCAGTGCTTACATCAAATCCAGCAAAGAAGTTGCCATTC
TCTGCAGTTTTCTGTTGGGCCTTGGAGACAGCTGCTTTAATACCCAGCTGCTTAGTATCTTGGGCTTTCT
GTATTCTGAAGACAGCGCCCCAGCATTTGCCATCTTCAAGTTTGTTCAGTCTATTTGCGCAGCCGTGGCA
TTTTTCTACAGCAACTACCTTCTCCTTCACTGGCAACTCCTGGTCATGGTGATATTTGGGTTTTTTGGAA
CAATTTCTTTCTTCACTGTGGAATGGGAAGCTGCCGCCTTTGTAGCCCGCGGCTCTGACTACCGAAGTAT
CTGA

Translation (397 aa):
MSPESKKLFNIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSVV
AIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAESDRRTVFIALTVISLVGTVLFFLIRK
PDSENVLGEDESSDDQDMEVNESAQNNLTKAVDAFKKSFKLCVTKEMLLLSITTAYTGLELTFFSGVYGT
CIGATNKFGAEEKSLIGLSGIFIGIGEILGGSLFGLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGD
APIAPVKGTDSSAYIKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFVQSICAAVA
FFYSNYLLLHWQLLVMVIFGFFGTISFFTVEWEAAAFVARGSDYRSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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