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Report for CCDS34871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34871.1 Public Homo sapiens 8 SCARA3 24 110 108 CCDS HistoryNCBI Gene:51435Re-query CCDS DB by CCDS ID:34871.1Re-query CCDS DB by GeneID:51435See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301904.4 ENSP00000301904.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301904.4Link to Ensembl Protein Viewer:ENSP00000301904.3Re-query CCDS DB by Nucleotide ID:ENST00000301904Re-query CCDS DB by Protein ID:ENSP00000301904
Original member Current member NCBI NM_016240.3 NP_057324.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016240.3Link to Protein Sequence:NP_057324.2Re-query CCDS DB by Nucleotide ID:NM_016240Re-query CCDS DB by Protein ID:NP_057324Link to BLAST:NP_057324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057324.2 606 Q6AZY7-1 606 100% 0 0

Chromosomal Locations for CCDS 34871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27634201 27634207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27649702 27649800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27651508 27651627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27656782 27656880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27658496 27659539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27670900 27671351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGAAAGTGAGGTCGGCCGGCGGCGATGGAGATGCCTTGTGCGTTACAGAAGAGGACCTGGCGGGTGACG
ACGAGGACATGCCGACCTTCCCATGCACCCAGAAGGGCCGGCCAGGGCCCCGCTGCAGCCGCTGCCAGAA
GAACCTATCTTTGCACACATCGGTGCGGATTCTTTACCTCTTCCTGGCCCTGCTCCTGGTGGCCGTGGCT
GTGTTGGCCTCTCTGGTTTTCAGAAAAGTGGACTCTCTCTCCGAAGACATCTCCTTGACCCAGTCTATTT
ATGACAAGAAGCTTGTGTTAATGCAGAAAAATCTCCAGGGCCTGGATCCGAAAGCCCTGAACAACTGCTC
TTTCTGCCATGAAGCTGGGCAGCTGGGGCCAGAGATCCGAAAACTGCAGGAGGAGCTGGAGGGAATTCAG
AAGCTGCTTCTGGCCCAGGAGGTGCAGCTGGACCAGACCTTACAGGCCCAGGAGGTGCTCTCCACCACCA
GCAGACAAATCTCCCAGGAGATGGGCAGTTGCTCCTTCTCCATCCACCAGGTTAACCAGTCTCTGGGGCT
CTTCCTGGCCCAGGTGAGAGGCTGGCAGGCCACCACAGCTGGCCTGGACCTCTCTCTGAAGGACCTCACC
CAGGAGTGCTACGATGTCAAGGCTGCAGTGCACCAGATCAACTTCACCGTGGGGCAGACTTCCGAGTGGA
TCCACGGGATCCAGCGGAAGACAGACGAGGAGACCCTGACCCTCCAGAAGATTGTCACCGACTGGCAGAA
CTACACACGGCTCTTCAGCGGCCTGCGCACCACCTCCACCAAGACTGGAGAGGCGGTCAAGAACATCCAG
GCCACCCTGGGGGCCTCCTCACAGCGCATCAGCCAGAACTCAGAGAGCATGCACGACCTGGTACTCCAGG
TCATGGGCTTGCAGCTGCAGCTGGATAACATCTCGTCCTTCCTGGATGACCACGAAGAGAACATGCATGA
TCTTCAGTACCATACCCACTACGCCCAGAACCGCACTGTGGAGAGGTTTGAGTCTCTGGAAGGACGCATG
GCTTCTCACGAGATTGAAATTGGCACCATCTTCACCAACATCAATGCCACCGACAACCACGTGCACAGCA
TGCTCAAGTACCTGGATGACGTGCGGCTCTCCTGCACGCTGGGCTTCCACACCCATGCCGAGGAGCTCTA
CTACCTGAACAAGTCTGTCTCCATCATGCTGGGCACCACAGACCTGCTCCGGGAGCGCTTCAGCCTGCTC
AGTGCCCGGCTGGACCTCAACGTCCGGAACCTCTCCATGATCGTGGAGGAGATGAAGGCAGTGGACACAC
AGCATGGAGAAATCCTTCGCAATGTCACCATCCTACGAGGTGCCCCCGGCCCTCCAGGACCAAGAGGATT
CAAAGGAGATATGGGCGTGAAAGGGCCTGTTGGCGGCAGAGGCCCGAAAGGAGACCCCGGCAGCTTGGGC
CCCCTGGGACCCCAGGGTCCTCAGGGGCAACCTGGAGAGGCCGGGCCTGTGGGAGAAAGGGGCCCTGTTG
GCCCTCGAGGGTTCCCAGGCCTCAAAGGCTCAAAGGGCAGCTTTGGAACTGGAGGGCCGAGAGGACAGCC
AGGCCCAAAAGGGGACATAGGGCCCCCAGGGCCAGAAGGGCCCCCGGGGTCTCCAGGGCCCTCAGGGCCT
CAGGGAAAACCGGGAATTGCAGGGAAGACAGGGTCACCAGGCCAGCGGGGGGCCATGGGGCCTAAGGGTG
AACCAGGGATCCAGGGTCCCCCTGGTCTCCCGGGGCCTCCAGGTCCACCAGGAAGCCAGAGCTTCTACTG
A

Translation (606 aa):
MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYLFLALLLVAVA
VLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCHEAGQLGPEIRKLQEELEGIQ
KLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQVNQSLGLFLAQVRGWQATTAGLDLSLKDLT
QECYDVKAAVHQINFTVGQTSEWIHGIQRKTDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQ
ATLGASSQRISQNSESMHDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRM
ASHEIEIGTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGRGPKGDPGSLG
PLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGP
QGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPPGSQSFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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