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Report for CCDS16033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16033.1 Public Mus musculus 2 Arl5a 23 108 98 CCDS HistoryNCBI Gene:75423Re-query CCDS DB by CCDS ID:16033.1Re-query CCDS DB by GeneID:75423See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036541.7 ENSMUSP00000041756.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036541.7Link to Ensembl Protein Viewer:ENSMUSP00000041756.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036541Re-query CCDS DB by Protein ID:ENSMUSP00000041756
Original member Current member NCBI NM_182994.2 NP_892039.1 Accepted alive Link to Nucleotide Sequence:NM_182994.2Link to Protein Sequence:NP_892039.1Re-query CCDS DB by Nucleotide ID:NM_182994Re-query CCDS DB by Protein ID:NP_892039Link to BLAST:NP_892039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_892039.1 179 Q80ZU0 179 100% 0 0

Chromosomal Locations for CCDS 16033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 52402384 52402432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52404906 52405057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52412062 52412145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52416064 52416211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52416636 52416696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52424590 52424635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGGAATTCTCTTTACCCGGATCTGGAGGCTGTTCAATCACCAGGAGCACAAAGTTATCATTGTTGGGC
TGGACAATGCTGGGAAGACGACCATCCTTTACCAGTTTTCCATGAATGAAGTCGTACACACATCTCCTAC
AATAGGAAGCAATGTGGAAGAGATTGTGGTTAATAATACCCGTTTCCTGATGTGGGATATTGGTGGCCAA
GAATCACTTCGTCCTTCCTGGAACACGTACTATACTAACACAGAGTTTGTAATAGTTGTTGTGGACAGCA
CAGACAGAGAAAGAATTTCGGTAACTAGAGAAGAGCTCTACAAGATGCTAGCCCACGAGGACCTAAGAAA
AGCTGGGTTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGACAGTAGCAGAAATCTCCCAG
TTTTTGAAGCTTACTTCTATAAAAGACCACCAGTGGCATATTCAAGCATGTTGCGCTCTTACTGGCGAGG
GGTTATGCCAAGGACTTGAATGGATGATGTCACGGCTGAAGATCAGATGA

Translation (179 aa):
MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQ
ESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ
FLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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