NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77622.1 Public Homo sapiens 21 KRTAP6-3 24 110 108 CCDS HistoryNCBI Gene:337968Re-query CCDS DB by CCDS ID:77622.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 77622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391624.1 ENSP00000375482.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391624.1Link to Ensembl Protein Viewer:ENSP00000375482.2Re-query CCDS DB by Nucleotide ID:ENST00000391624Re-query CCDS DB by Protein ID:ENSP00000375482
Current member NCBI NM_001433434.1 NP_001420363.1 Accepted alive Link to Nucleotide Sequence:NM_001433434.1Link to Protein Sequence:NP_001420363.1Re-query CCDS DB by Nucleotide ID:NM_001433434Re-query CCDS DB by Protein ID:NP_001420363Link to BLAST:NP_001420363.1
Original member NCBI NM_181605.4 NP_853636.3 MANE Select Updated not alive Link to Nucleotide Sequence:NM_181605.4Link to Protein Sequence:NP_853636.3Re-query CCDS DB by Nucleotide ID:NM_181605Re-query CCDS DB by Protein ID:NP_853636
NCBI NM_181605.5 NP_853636.4 Updated not alive Link to Nucleotide Sequence:NM_181605.5Link to Protein Sequence:NP_853636.4Re-query CCDS DB by Nucleotide ID:NM_181605Re-query CCDS DB by Protein ID:NP_853636
NCBI NM_181605.6 NP_853636.4 Removed not alive Link to Nucleotide Sequence:NM_181605.6Link to Protein Sequence:NP_853636.4Re-query CCDS DB by Nucleotide ID:NM_181605Re-query CCDS DB by Protein ID:NP_853636Link to BLAST:NP_853636.4

Chromosomal Locations for CCDS 77622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 30592446 30592778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGACCTCAACAACCAACACCATGTGTGGCAGCTACTACAGAAACTACAATGGTGGCCATGGCTATGGGT
GCTGTGGCTACGGAGGCCTGGGCTGTGGTTATGGCGGCTGTGGCTATGGGTGCTGTGGCTACGGAGGCCT
GGGCTTTGGCTATGGAGGCCTGGACTGTGGCTATGGAGGCCTGGGCTGTGGCTATGGCTCCTTCTGTGGC
TGTGGCTACAGAGGCCTGGACTGTGGCTATGGCTGTGGCTATGGCTATGTCTCCCACTCCTTCTGTGGCT
GTGGCTATAGGTGCGGCTCTGGCTATGGCTCCAGCTTTGGCTACTACTATTGA

Translation (110 aa):
MTSTTNTMCGSYYRNYNGGHGYGCCGYGGLGCGYGGCGYGCCGYGGLGFGYGGLDCGYGGLGCGYGSFCG
CGYRGLDCGYGCGYGYVSHSFCGCGYRCGSGYGSSFGYYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH