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Report for CCDS31158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31158.1 Public Homo sapiens 10 ST8SIA6 24 110 108 CCDS HistoryNCBI Gene:338596Re-query CCDS DB by CCDS ID:31158.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377602.5 ENSP00000366827.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377602.5Link to Ensembl Protein Viewer:ENSP00000366827.4Re-query CCDS DB by Nucleotide ID:ENST00000377602Re-query CCDS DB by Protein ID:ENSP00000366827
Original member Current member NCBI NM_001004470.3 NP_001004470.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004470.3Link to Protein Sequence:NP_001004470.1Re-query CCDS DB by Nucleotide ID:NM_001004470Re-query CCDS DB by Protein ID:NP_001004470Link to BLAST:NP_001004470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004470.1 398 P61647 398 100% 0 0

Chromosomal Locations for CCDS 31158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 17320878 17321346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17323065 17323157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17327014 17327126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17331408 17331552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17359514 17359600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17390531 17390620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17453559 17453657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17454155 17454255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGCGGCCGGGGGGCGCACTGCTCGCCCTGCTCGCCAGCCTGCTGCTGCTGCTGCTGCTGCGCCTGCTCT
GGTGCCCGGCAGACGCGCCCGGCCGCGCCAGGATTCTGGTGGAGGAAAGCAGGGAGGCCACCCACGGCAC
CCCCGCAGCGCTGAGGACGCTCCGGAGCCCGGCGACCGCGGTACCGCGCGCCACTAACAGCACATATCTG
AATGAGAAGTCGCTCCAACTGACGGAGAAATGCAAAAATCTGCAATATGGCATTGAGTCTTTCTCTAACA
AAACGAAAGGGTATTCAGAGAACGACTACCTTCAGATTATCACAGATATACAGAGTTGTCCATGGAAACG
GCAAGCAGAAGAATATGCAAATTTTAGAGCCAAACTTGCTTCCTGCTGTGATGCTGTTCAAAACTTTGTT
GTTTCTCAGAATAACACTCCAGTTGGGACTAATATGAGTTACGAGGTGGAAAGCAAAAAAGAAATCCCAA
TTAAGAAGAACATTTTTCATATGTTTCCAGTGTCCCAGCCTTTTGTGGACTACCCTTATAATCAGTGTGC
AGTGGTCGGAAATGGGGGAATTCTGAATAAGTCTCTCTGTGGAACTGAAATAGATAAATCCGACTTCGTT
TTTAGGTGTAACCTACCCCCAACCACAGGAGATGTTAGTAAAGATGTTGGCAGTAAAACAAATCTTGTGA
CTATAAATCCAAGCATCATAACTCTGAAATATGGGAACTTAAAGGAAAAAAAAGCCCTATTTCTGGAGGA
CATTGCAACCTATGGAGATGCATTTTTTCTTCTGCCAGCATTTTCCTTCAGGGCCAACACGGGTACCTCT
TTCAAAGTATACTACACGCTCGAAGAGTCTAAAGCAAGACAAAAGGTTCTATTTTTCCATCCCAAGTACC
TGAAAGATCTGGCCCTTTTCTGGAGAACTAAAGGTGTGACTGCATACCGCTTGTCCACCGGCTTGATGAT
CACAAGTGTTGCAGTGGAACTGTGTAAAAATGTGAAGCTGTATGGATTCTGGCCCTTCTCTAAAACTGTA
GAAGACATACCTGTCAGCCATCACTATTATGACAACAAGCTACCTAAACATGGTTTCCATCAGATGCCCA
AAGAATACAGCCAGATCCTCCAACTTCACATGAAAGGAATCCTCAAACTGCAATTTAGCAAATGTGAAGT
CGCCTAA

Translation (398 aa):
MRPGGALLALLASLLLLLLLRLLWCPADAPGRARILVEESREATHGTPAALRTLRSPATAVPRATNSTYL
NEKSLQLTEKCKNLQYGIESFSNKTKGYSENDYLQIITDIQSCPWKRQAEEYANFRAKLASCCDAVQNFV
VSQNNTPVGTNMSYEVESKKEIPIKKNIFHMFPVSQPFVDYPYNQCAVVGNGGILNKSLCGTEIDKSDFV
FRCNLPPTTGDVSKDVGSKTNLVTINPSIITLKYGNLKEKKALFLEDIATYGDAFFLLPAFSFRANTGTS
FKVYYTLEESKARQKVLFFHPKYLKDLALFWRTKGVTAYRLSTGLMITSVAVELCKNVKLYGFWPFSKTV
EDIPVSHHYYDNKLPKHGFHQMPKEYSQILQLHMKGILKLQFSKCEVA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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