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Report for CCDS55740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55740.1 Public Homo sapiens 11 ARFIP2 24 110 108 CCDS HistoryNCBI Gene:23647Re-query CCDS DB by CCDS ID:55740.1Re-query CCDS DB by GeneID:23647See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423813.6 ENSP00000398375.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423813.6Link to Ensembl Protein Viewer:ENSP00000398375.2Re-query CCDS DB by Nucleotide ID:ENST00000423813Re-query CCDS DB by Protein ID:ENSP00000398375
Original member Current member NCBI NM_001242855.3 NP_001229784.1 Accepted alive Link to Nucleotide Sequence:NM_001242855.3Link to Protein Sequence:NP_001229784.1Re-query CCDS DB by Nucleotide ID:NM_001242855Re-query CCDS DB by Protein ID:NP_001229784Link to BLAST:NP_001229784.1
Original member Current member NCBI NM_001370408.2 NP_001357337.1 Accepted alive Link to Nucleotide Sequence:NM_001370408.2Link to Protein Sequence:NP_001357337.1Re-query CCDS DB by Nucleotide ID:NM_001370408Re-query CCDS DB by Protein ID:NP_001357337Link to BLAST:NP_001357337.1
Original member Current member NCBI NM_001376563.2 NP_001363492.1 Accepted alive Link to Nucleotide Sequence:NM_001376563.2Link to Protein Sequence:NP_001363492.1Re-query CCDS DB by Nucleotide ID:NM_001376563Re-query CCDS DB by Protein ID:NP_001363492Link to BLAST:NP_001363492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229784.1 303 P53365-3 303 100% 0 0
NP_001357337.1 303 P53365-3 303 100% 0 0
NP_001363492.1 303 P53365-3 303 100% 0 0

Chromosomal Locations for CCDS 55740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6477113 6477268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6477718 6477892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6478041 6478198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6478738 6478959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6479140 6479258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6479972 6480053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGTGTCAGGACCCAACCTCAATGAAACCAGCATTGTGTCTGGTGGCTATGGGGGCTCTGGTGATGGAC
TCATCCCCACAGGGTCTGGCCGCCATCCATCTCACAGCACCACTCCTTCTGGCCCTGGAGATGAGGTGGC
TCGGGGCATTGCTGGAGAAAAGTTTGACATCGTCAAGAAATGGGGCATCAACACCTATAAGTGCACAAAG
CAACTGTTATCAGAACGATTTGGTCGAGGCTCACGGACTGTGGACCTGGAGCTAGAGCTGCAGATTGAGT
TGCTGCGTGAGACGAAGCGCAAGTATGAGAGTGTCCTGCAGCTGGGCCGGGCACTGACAGCCCACCTCTA
CAGCCTGCTGCAGACCCAGCATGCACTGGGTGATGCCTTTGCTGACCTCAGCCAGAAGTCCCCAGAGCTT
CAGGAGGAATTTGGCTACAATGCAGAGACACAGAAACTACTATGCAAGAATGGGGAAACGCTGCTAGGAG
CCGTGAACTTCTTTGTCTCTAGCATCAACACATTGGTCACCAAGACCATGGAAGACACGCTCATGACTGT
GAAACAGTATGAGGCTGCCAGGCTGGAATATGATGCCTACCGAACAGACTTAGAGGAGCTGAGTCTAGGC
CCCCGGGATGCAGGGACACGTGGTCGACTTGAGAGTGCCCAGGCCACTTTCCAGGCCCATCGGGACAAGT
ATGAGAAGCTGCGGGGAGATGTGGCCATCAAGCTCAAGTTCCTGGAAGAAAACAAGATCAAGGTGATGCA
CAAGCAGCTGCTGCTCTTCCACAATGCTGTGTCCGCCTACTTTGCTGGGAACCAGAAACAGCTGGAGCAG
ACCCTGCAGCAGTTCAACATCAAGCTGCGGCCTCCAGGAGCTGAGAAACCCTCCTGGCTAGAGGAGCAGT
GA

Translation (303 aa):
MVSGPNLNETSIVSGGYGGSGDGLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTK
QLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPEL
QEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG
PRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQ
TLQQFNIKLRPPGAEKPSWLEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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