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Report for CCDS33298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33298.1 Public Homo sapiens 2 SPOPL 24 110 108 CCDS HistoryNCBI Gene:339745Re-query CCDS DB by CCDS ID:33298.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280098.9 ENSP00000280098.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280098.9Link to Ensembl Protein Viewer:ENSP00000280098.4Re-query CCDS DB by Nucleotide ID:ENST00000280098Re-query CCDS DB by Protein ID:ENSP00000280098
Original member Current member NCBI NM_001001664.3 NP_001001664.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001664.3Link to Protein Sequence:NP_001001664.1Re-query CCDS DB by Nucleotide ID:NM_001001664Re-query CCDS DB by Protein ID:NP_001001664Link to BLAST:NP_001001664.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001664.1 392 Q6IQ16 392 100% 0 0

Chromosomal Locations for CCDS 33298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 138550217 138550294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138550483 138550604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138550903 138551054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138552554 138552681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138559022 138559199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138559282 138559337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138560805 138560927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138564708 138564850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138564940 138564993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138568936 138569080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATATGTCTACTGGTCCCATAGCAGAAAGCTGGTGTT
ACACACAGGTTAAAGTAGTAAAATTTTCCTATATGTGGACCATTAATAACTTCAGTTTTTGTCGAGAGGA
AATGGGTGAAGTGTTAAAAAGTTCAACATTTTCATCTGGCCCAAGTGACAAAATGAAATGGTGCCTGAGG
GTAAACCCAAAGGGATTAGATGATGAAAGTAAAGACTACTTGTCCTTATATTTGCTTTTAGTCAGCTGCC
CCAAAAGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCTGAATGCTAAAAGGGAAGAAACAAAAGCAAT
GGAAAGCCAAAGAGCATATCGATTTGTGCAAGGGAAGGACTGGGGTTTTAAAAAATTCATTAGAAGGGAC
TTTTTGCTTGATGAAGCTAATGGTCTTTTACCAGATGACAAGCTTACATTATTTTGTGAGGTGAGTGTGG
TCCAAGATTCAGTAAACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCTGAGTGTCGTCTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAGTTTTTTCGTGAGAGGACAAGAA
TTTAAAGCTCATAAATCTGTGCTTGCAGCTCGATCTCCAGTTTTTAACGCCATGTTTGAACATGAAATGG
AAGAAAGCAAAAAGAATCGAGTGGAAATAAATGATTTAGACCCTGAAGTTTTTAAAGAAATGATGAGATT
CATTTACACAGGGAGAGCACCAAACCTTGACAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATAT
GCACTGGAACGGCTGAAGGTCATGTGCGAAGAAGCTTTGTGTAGTAACCTCTCAGTAGAGAATGTTGCAG
ATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCACAAGCCATAGACTTTATTAATAG
GTGCAGTGTACTTCGACAACTTGGGTGTAAAGATGGGAAAAACTGGAACAGCAACCAAGCAACCGACATA
ATGGAAACATCAGGGTGGAAGTCCATGATTCAGTCTCACCCTCATTTAGTAGCAGAAGCCTTTCGAGCAC
TAGCATCTGCACAGTGTCCACAGTTTGGCATTCCACGCAAACGGCTAAAACAGTCCTGA

Translation (392 aa):
MSREPTPPLPGDMSTGPIAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSGPSDKMKWCLR
VNPKGLDDESKDYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQRAYRFVQGKDWGFKKFIRRD
FLLDEANGLLPDDKLTLFCEVSVVQDSVNISGHTNTNTLKVPECRLAEDLGNLWENTRFTDCSFFVRGQE
FKAHKSVLAARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDKMADNLLAAADKY
ALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNQATDI
METSGWKSMIQSHPHLVAEAFRALASAQCPQFGIPRKRLKQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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