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Report for CCDS45178.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45178.2 Public Homo sapiens 14 PACS2 24 110 108 CCDS HistoryNCBI Gene:23241Re-query CCDS DB by CCDS ID:45178.2Re-query CCDS DB by GeneID:23241See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 45178.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45178.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447393.6 ENSP00000393559.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447393.6Link to Ensembl Protein Viewer:ENSP00000393559.2Re-query CCDS DB by Nucleotide ID:ENST00000447393Re-query CCDS DB by Protein ID:ENSP00000393559
Original member Current member NCBI NM_001100913.3 NP_001094383.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100913.3Link to Protein Sequence:NP_001094383.2Re-query CCDS DB by Nucleotide ID:NM_001100913Re-query CCDS DB by Protein ID:NP_001094383Link to BLAST:NP_001094383.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094383.2 904 Q86VP3-2 904 100% 0 0

Chromosomal Locations for CCDS 45178.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 105314919 105315037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105348493 105348580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105352378 105352467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105355052 105355177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105367213 105367375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105368074 105368147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105368459 105368539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105369841 105369900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105376768 105376925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105379739 105379829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105380080 105380154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105380957 105381099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105381914 105382058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105382477 105382581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105382807 105382913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105383359 105383513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105384353 105384463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105384879 105384987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105385685 105385717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105389961 105390003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105391207 105391249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105391631 105391766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105392619 105392845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105393222 105393335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105394554 105394672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGGCCGAGCGAGGCCGCCTCGGCCTCCCCGGCGCGCCCGGCGCGCTCAACACGCCCGTGCCCATGAACC
TGTTCGCCACCTGGGAGGTGGACGGCTCCAGCCCCAGCTGCGTGCCCAGGTTGTGCAGCCTGACTCTGAA
GAAGCTGGTGGTCTTCAAGGAGCTGGAGAAGGAGCTGATCTCCGTGGTGATCGCTGTCAAGATGCAGGGC
TCCAAACGAATCCTGCGGTCCCATGAGATTGTGCTGCCCCCCAGTGGACAAGTGGAGACAGACCTGGCCC
TGACCTTCTCCTTGCAGTATCCTCACTTCTTGAAGAGGGAAGGCAACAAGCTTCAGATCATGCTGCAGCG
CAGAAAGCGCTACAAGAACAGAACCATCCTGGGCTACAAGACGCTGGCCGCGGGCTCCATCAGCATGGCT
GAGGTGATGCAACACCCGTCTGAAGGTGGCCAGGTGCTGAGCCTCTGCAGCAGCATCAAGGAGGCCCCCG
TCAAGGCGGCCGAGATCTGGATCGCCTCCCTGTCCAGCCAGCCCATTGACCACGAAGACAGCACCATGCA
GGCCGGCCCCAAGGCCAAGTCCACGGATAACTACTCCGAGGAGGAGTATGAGAGCTTCTCCTCCGAGCAG
GAGGCCAGTGACGACGCCGTGCAGGGGCAGGACTTGGACGAGGACGACTTTGACGTGGGGAAGCCGAAGA
AGCAGCGGAGATCGATTGTAAGAACGACGTCCATGACCAGGCAACAGAACTTCAAGCAGAAAGTGGTAGC
GCTGCTGCGGAGGTTCAAAGTGTCCGACGAGGTCCTGGACTCGGAGCAGGACCCTGCGGAGCACATCCCC
GAGGCAGAGGAGGACCTGGACCTCCTGTATGACACCCTGGACATGGAGCACCCCAGCGACAGCGGCCCCG
ACATGGAGGATGACGACAGCGTCCTCAGCACCCCCAAGCCGAAGCTGCGGCCATACTTTGAAGGCCTGTC
GCACTCGAGCTCGCAGACGGAGATTGGGAGCATCCACAGCGCCCGCAGCCACAAGGAGCCCCCAAGCCCG
GCTGACGTGCCCGAGAAGACGCGGTCCCTGGGAGGCAGGCAGCCGAGCGACAGTGTCTCTGACACGGTGG
CCCTCGGTGTGCCAGGCCCGAGGGAGCACCCTGGACAGCCTGAGGACAGCCCCGAGGCTGAGGCCTCCAC
CCTGGATGTGTTCACGGAGAGGCTGCCGCCCAGCGGGAGGATCACCAAGACAGAGTCCCTTGTCATCCCC
TCCACCAGGTCCGAGGGGAAGCAGGCTGGCCGACGGGGCCGGAGCACATCCTTGAAGGAGCGGCAGGCAG
CACGGCCCCAGAATGAGCGGGCCAACAGCCTGGACAACGAGCGCTGCCCGGACGCCCGGAGCCAGCTACA
GGTGCAGCTGCAGATCCCCAGGAAGACTGTGTATGACCAGCTCAACCACATCCTCATCTCCGATGACCAG
CTTCCCGAAAACATCATCCTTGTCAACACCTCGGACTGGCAGGGGCAGTTCCTCTCCGACGTCCTGCAGA
GGCACACGCTCCCCGTGGTGTGCACGTGCTCTCCTGCGGACGTCCAGGCGGCCTTCAGCACCATCGTCTC
ACGGATACAGAGATACTGCAACTGCAATTCCCAGCCCCCGACCCCCGTGAAGATCGCCGTGGCGGGAGCG
CAGCATTACCTCAGTGCCATCCTGCGGCTCTTTGTGGAGCAGCTGTCCCACAAGACACCCGACTGGCTCG
GCTACATGCGCTTCCTGGTCATCCCACTGGGCTCCCACCCCGTGGCCAGGTACCTAGGCTCCGTGGACTA
CCGCTACAACAACTTCTTCCAGGACCTGGCCTGGAGAGACCTGTTCAACAAGCTGGAGGCCCAGAGTGCG
GTACAGGACACGCCAGACATTGTGTCACGCATCACGCAGTACATCGCAGGGGCCAACTGTGCCCACCAGC
TCCCCATCGCAGAGGCCATGCTGACCTACAAGCAGAAGAGGAAAAAGCATTTTCATTTTGACTTTACCCT
AAGCCCTGACGAAGAGTCCTCCCAAAAGTTCATTCCCTTTGTCGGGGTTGTGAAGGTTGGAATTGTGGAG
CCATCCTCGGCCACATCAGGCGACTCGGACGACGCGGCCCCCTCGGGCTCTGGCACGCTCTCCTCCACCC
CGCCGTCCGCATCTCCTGCGGCCAAGGAGGCCTCACCCACCCCGCCCTCCTCCCCGTCGGTGAGCGGAGG
CCTGTCCTCCCCCAGCCAGGGTGTCGGCGCCGAGCTGATGGGGCTGCAGGTGGACTACTGGACGGCAGCA
CAGCCTGCGGACAGGAAGAGGGACGCCGAGAAGAAGGACCTGCCTGTCACCAAAAACACGCTCAAGTGCA
CTTTCCGGTCCCTCCAGGTCAGCAGGCTGCCCAGCAGCGGCGAGGCTGCAGCCACGCCCACCATGTCCAT
GACCGTGGTCACCAAGGAGAAGAACAAGAAGGTGATGTTTCTGCCCAAGAAAGCGAAGGACAAGGACGTG
GAGTCTAAGAGCCAGTGCATTGAGGGCATCAGCCGGCTCATCTGCACTGCCAGGCAGCAGCAGAACATGC
TGCGGGTCCTCATCGACGGCGTGGAGTGCAGCGACGTCAAGTTCTTCCAGCTGGCCGCGCAGTGGTCCTC
GCACGTGAAGCACTTCCCCATCTGCATCTTCGGACACTCCAAGGCCACCTTCTAG

Translation (904 aa):
MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLVVFKELEKELISVVIAVKMQG
SKRILRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSISMA
EVMQHPSEGGQVLSLCSSIKEAPVKAAEIWIASLSSQPIDHEDSTMQAGPKAKSTDNYSEEEYESFSSEQ
EASDDAVQGQDLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVALLRRFKVSDEVLDSEQDPAEHIP
EAEEDLDLLYDTLDMEHPSDSGPDMEDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHKEPPSP
ADVPEKTRSLGGRQPSDSVSDTVALGVPGPREHPGQPEDSPEAEASTLDVFTERLPPSGRITKTESLVIP
STRSEGKQAGRRGRSTSLKERQAARPQNERANSLDNERCPDARSQLQVQLQIPRKTVYDQLNHILISDDQ
LPENIILVNTSDWQGQFLSDVLQRHTLPVVCTCSPADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGA
QHYLSAILRLFVEQLSHKTPDWLGYMRFLVIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSA
VQDTPDIVSRITQYIAGANCAHQLPIAEAMLTYKQKRKKHFHFDFTLSPDEESSQKFIPFVGVVKVGIVE
PSSATSGDSDDAAPSGSGTLSSTPPSASPAAKEASPTPPSSPSVSGGLSSPSQGVGAELMGLQVDYWTAA
QPADRKRDAEKKDLPVTKNTLKCTFRSLQVSRLPSSGEAAATPTMSMTVVTKEKNKKVMFLPKKAKDKDV
ESKSQCIEGISRLICTARQQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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