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Report for CCDS13217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13217.1 Public Homo sapiens 20 BPIFA1 24 110 108 CCDS HistoryNCBI Gene:51297Re-query CCDS DB by CCDS ID:13217.1Re-query CCDS DB by GeneID:51297See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13217.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354297.9 ENSP00000346251.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354297.9Link to Ensembl Protein Viewer:ENSP00000346251.4Re-query CCDS DB by Nucleotide ID:ENST00000354297Re-query CCDS DB by Protein ID:ENSP00000346251
Original member Current member EBI ENST00000375413.8 ENSP00000364562.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375413.8Link to Ensembl Protein Viewer:ENSP00000364562.4Re-query CCDS DB by Nucleotide ID:ENST00000375413Re-query CCDS DB by Protein ID:ENSP00000364562
Original member Current member EBI ENST00000375422.6 ENSP00000364571.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375422.6Link to Ensembl Protein Viewer:ENSP00000364571.2Re-query CCDS DB by Nucleotide ID:ENST00000375422Re-query CCDS DB by Protein ID:ENSP00000364571
Original member Current member NCBI NM_001243193.2 NP_001230122.1 Accepted alive Link to Nucleotide Sequence:NM_001243193.2Link to Protein Sequence:NP_001230122.1Re-query CCDS DB by Nucleotide ID:NM_001243193Re-query CCDS DB by Protein ID:NP_001230122Link to BLAST:NP_001230122.1
Original member Current member NCBI NM_016583.4 NP_057667.1 Accepted alive Link to Nucleotide Sequence:NM_016583.4Link to Protein Sequence:NP_057667.1Re-query CCDS DB by Nucleotide ID:NM_016583Re-query CCDS DB by Protein ID:NP_057667Link to BLAST:NP_057667.1
Original member Current member NCBI NM_130852.3 NP_570913.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130852.3Link to Protein Sequence:NP_570913.1Re-query CCDS DB by Nucleotide ID:NM_130852Re-query CCDS DB by Protein ID:NP_570913Link to BLAST:NP_570913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230122.1 256 Q9NP55-1 256 100% 0 0
NP_057667.1 256 Q9NP55-1 256 100% 0 0
NP_570913.1 256 Q9NP55-1 256 100% 0 0

Chromosomal Locations for CCDS 13217.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33237712 33237871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33238055 33238214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33239803 33239910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33240233 33240385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33241385 33241469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33242056 33242119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33242487 33242527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGTTTCAAACTGGGGGCCTCATTGTCTTCTACGGGCTGTTAGCCCAGACCATGGCCCAGTTTGGAGGCC
TGCCCGTGCCCCTGGACCAGACCCTGCCCTTGAATGTGAATCCAGCCCTGCCCTTGAGTCCCACAGGTCT
TGCAGGAAGCTTGACAAATGCCCTCAGCAATGGCCTGCTGTCTGGGGGCCTGTTGGGCATTCTGGAAAAC
CTTCCGCTCCTGGACATCCTGAAGCCTGGAGGAGGTACTTCTGGTGGCCTCCTTGGGGGACTGCTTGGAA
AAGTGACGTCAGTGATTCCTGGCCTGAACAACATCATTGACATAAAGGTCACTGACCCCCAGCTGCTGGA
ACTTGGCCTTGTGCAGAGCCCTGATGGCCACCGTCTCTATGTCACCATCCCTCTCGGCATAAAGCTCCAA
GTGAATACGCCCCTGGTCGGTGCAAGTCTGTTGAGGCTGGCTGTGAAGCTGGACATCACTGCAGAAATCT
TAGCTGTGAGAGATAAGCAGGAGAGGATCCACCTGGTCCTTGGTGACTGCACCCATTCCCCTGGAAGCCT
GCAAATTTCTCTGCTTGATGGACTTGGCCCCCTCCCCATTCAAGGTCTTCTGGACAGCCTCACAGGGATC
TTGAATAAAGTCCTGCCTGAGTTGGTTCAGGGCAACGTGTGCCCTCTGGTCAATGAGGTTCTCAGAGGCT
TGGACATCACCCTGGTGCATGACATTGTTAACATGCTGATCCACGGACTACAGTTTGTCATCAAGGTCTA
A

Translation (256 aa):
MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLLSGGLLGILEN
LPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQ
VNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTGI
LNKVLPELVQGNVCPLVNEVLRGLDITLVHDIVNMLIHGLQFVIKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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