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Report for CCDS87748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87748.1 Public Homo sapiens X IQSEC2 24 110 108 CCDS HistoryNCBI Gene:23096Re-query CCDS DB by CCDS ID:87748.1Re-query CCDS DB by GeneID:23096See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87748.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000639161.2 ENSP00000491796.1 MANE Plus Clinical Accepted alive Link to Ensembl Transcript Viewer:ENST00000639161.2Link to Ensembl Protein Viewer:ENSP00000491796.1Re-query CCDS DB by Nucleotide ID:ENST00000639161Re-query CCDS DB by Protein ID:ENSP00000491796
Original member Current member NCBI NM_001243197.2 NP_001230126.1 MANE Plus Clinical Accepted alive Link to Nucleotide Sequence:NM_001243197.2Link to Protein Sequence:NP_001230126.1Re-query CCDS DB by Nucleotide ID:NM_001243197Re-query CCDS DB by Protein ID:NP_001230126Link to BLAST:NP_001230126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230126.1 73 Q5JU85-4 73 100% 0 0

Chromosomal Locations for CCDS 87748.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53266965 53267064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53279564 53279659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53281496 53281521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (222 nt):
ATGGAGCCCCCCGGGAGGAGCAGCAGGTCCACAGCGTCTCATACTCTACACCAGTATTGCTGTCCTACTC
AGGTCCTTGACTCCATGAAGCTTACCCCCTCAGGCAGGCTGGCAGAGAGCAGGGAAGAGGAGGAGGAGGA
GGAGACTGAGGAAGAGGAAGAGGAAGACGCTCACCAGTTCTGCTGTCCGGCCTCCGAGTGCAGTAGTCCC
TCCTCTCGGTAA

Translation (73 aa):
MEPPGRSSRSTASHTLHQYCCPTQVLDSMKLTPSGRLAESREEEEEEETEEEEEEDAHQFCCPASECSSP
SSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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