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Report for CCDS11702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11702.1 Public Homo sapiens 17 CD300E 24 110 108 CCDS HistoryNCBI Gene:342510Re-query CCDS DB by CCDS ID:11702.1See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11702.1
This CCDS representation contains an upstream in-frame start codon that could result in a longer protein N-terminus. However, a downstream start codon is annotated because use of the upstream start codon would eliminate an N-terminal signal peptide, whose presence is consistent with functional support for CD300 family members (e.g., PMIDs 16920917, 19359216).

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392619.2 ENSP00000376395.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392619.2Link to Ensembl Protein Viewer:ENSP00000376395.2Re-query CCDS DB by Nucleotide ID:ENST00000392619Re-query CCDS DB by Protein ID:ENSP00000376395
Original member Current member NCBI NM_181449.3 NP_852114.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181449.3Link to Protein Sequence:NP_852114.2Re-query CCDS DB by Nucleotide ID:NM_181449Re-query CCDS DB by Protein ID:NP_852114Link to BLAST:NP_852114.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852114.2 205 Q496F6 205 100% 0 0

Chromosomal Locations for CCDS 11702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74612653 74612773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74613925 74614033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74617118 74617465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74623582 74623621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTGGCTGCTCCCAGCTCTACTCCTTCTCTGCCTCTCAGGCTGTTTGTCTCTGAAGGGCCCCGGCTCTG
TGACTGGCACTGCGGGGGACTCTCTGACAGTGTGGTGTCAGTATGAGAGCATGTACAAGGGATATAACAA
GTACTGGTGCCGAGGACAGTACGACACGTCATGTGAGAGCATTGTGGAGACCAAGGGAGAAGAGAAGGTG
GAGAGGAATGGCCGCGTGTCCATCAGAGACCACCCGGAGGCTCTCGCCTTCACTGTGACCATGCAGAACC
TCAATGAAGATGATGCTGGATCTTACTGGTGCAAAATTCAGACAGTGTGGGTCCTGGATTCATGGTCACG
CGATCCCTCGGACCTGGTTAGGGTGTATGTTTCCCCAGCAATTACAACCCCAAGGAGGACCACACATCCA
GCCACACCTCCCATCTTCCTGGTGGTGAACCCTGGGCGAAACCTCAGCACCGGGGAGGTGTTGACCCAAA
ATTCAGGGTTCCGGCTCAGCAGCCCTCACTTCCTGCTCGTGGTCCTTCTGAAGCTGCCCCTGCTCCTGAG
CATGCTGGGTGCTGTCTTCTGGGTGAACAGGCCTCAGTGGGCTCCTCCTGGAAGATAG

Translation (205 aa):
MWLLPALLLLCLSGCLSLKGPGSVTGTAGDSLTVWCQYESMYKGYNKYWCRGQYDTSCESIVETKGEEKV
ERNGRVSIRDHPEALAFTVTMQNLNEDDAGSYWCKIQTVWVLDSWSRDPSDLVRVYVSPAITTPRRTTHP
ATPPIFLVVNPGRNLSTGEVLTQNSGFRLSSPHFLLVVLLKLPLLLSMLGAVFWVNRPQWAPPGR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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