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Report for CCDS72708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72708.1 Public Homo sapiens 1 PRAMEF5 24 110 108 CCDS HistoryNCBI Gene:343068Re-query CCDS DB by CCDS ID:72708.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622421.3 ENSP00000480122.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000622421.3Link to Ensembl Protein Viewer:ENSP00000480122.1Re-query CCDS DB by Nucleotide ID:ENST00000622421Re-query CCDS DB by Protein ID:ENSP00000480122
Original member Current member NCBI NM_001013407.5 NP_001013425.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013407.5Link to Protein Sequence:NP_001013425.2Re-query CCDS DB by Nucleotide ID:NM_001013407Re-query CCDS DB by Protein ID:NP_001013425Link to BLAST:NP_001013425.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013425.2 476 Q5TYX0 476 100% 0 0

Chromosomal Locations for CCDS 72708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13259269 13259555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13260222 13260803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13262550 13263111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGAGCATCCGGACTCCACCCAGACTCCTGGAGCTTGCAGGGCGGAGCCTGCTGAGGGACCAAGCCTTGG
CCATGTCCACCCTGGAGGAGCTGCCCACAGAACTTTTCCCCCCACTGTTCATGGAGGCCTTCAGCAGGAG
ACGCTGTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCCTTCCGCCGCCTCCCTCTGAGGCCTCTGATA
AAGATGCCTTGTCTGGAGGCCTTCCAAGCTGTGCTCGATGGGCTGGATGCACTGCTTACCCAAGGGGTTC
ATCCCAGGAGGTGGAAACTTCAAGTGCTGGATTTACAGGATGTCTGTGAGAACTTCTGGATGGTTTGGTC
TGAAGCTATGGCCCATGGGTGCTTCCTCAATGCCAAGAGGAACAAAAAACCAGTGCAGGACTGTCCAAGG
ATGAGAGGACAGCAGCCCTTGACTGTGTTCGTAGAACTTTGGCTCAAGAACAGGACTCTGGATGAATACC
TCACCTGCCTCCTTCTATGGGTCAAGCAGAGGAAAGATTTACTACACCTGTGCTGTAAGAAGCTGAAAAT
TTTGGGAATGCCCTTCCGCAATATCAGAAGCATCCTGAAAATGGTGAACCTAGACTGTATCCAGGAGGTG
GAAGTGAATTGCAAGTGGGTACTGCCCATCCTGACACAGTTTACCCCATACCTGGGCCACATGAGGAATC
TTCAGAAGCTCGTTCTCTCCCACATGGATGTCTCTCGCTACGTTTCCCCAGAGCAGAAGAAGGAGATTGT
TACCCAGTTCACCACTCAGTTCCTCAAGCTGTGCTGCCTCCAAAAGCTTTCTATGAACTCTGTTTCTTTC
CTCGAAGGCCACCTGGACCAGCTGCTCAGCTGTCTGAAGACCTCGTTAAAGGTCCTCACAATAACTAACT
GTGTGCTTTTGGAATCAGACTTGAAGCATCTATCCCAGTGCCCGAGTATCAGTCAACTAAAGACCCTGGA
CCTGAGTGGCATCAGACTGACCAATTACAGTCTTGTGCCTCTCCAAATTCTCCTAGAAAAAGTTGCAGCC
ACCCTTGAGTACCTGGATTTAGATGACTGTGGCATCATAGACTCCCAAGTCAACGCCATCCTGCCTGCCC
TGAGCCGCTGCTTTGAGCTCAACACCTTCAGCTTCTGTGGAAATCCCATCTCCATGGCCACCCTGGAGAA
CCTGCTGAGCCACACAATCATACTCAAAAACTTATGCGTGGAGCTGTATCCTGCCCCCCGGGAGAGTTAT
GATGCTGATGGTACTCTCTGCTGGAGCAGATTTCCTCAAATTAGGGCTGAGCTGATGAAGAGAGTGAGGG
ACTTAAGGCACCCCAAGAGGATCTTGTTCTGTACTGACTGCTGCCCTGACTGTGGCAACAGGTCATTTTA
TGACCTGGAGGCAGATCAATGCTGCTGTTGA

Translation (476 aa):
MSIRTPPRLLELAGRSLLRDQALAMSTLEELPTELFPPLFMEAFSRRRCEALKLMVQAWPFRRLPLRPLI
KMPCLEAFQAVLDGLDALLTQGVHPRRWKLQVLDLQDVCENFWMVWSEAMAHGCFLNAKRNKKPVQDCPR
MRGQQPLTVFVELWLKNRTLDEYLTCLLLWVKQRKDLLHLCCKKLKILGMPFRNIRSILKMVNLDCIQEV
EVNCKWVLPILTQFTPYLGHMRNLQKLVLSHMDVSRYVSPEQKKEIVTQFTTQFLKLCCLQKLSMNSVSF
LEGHLDQLLSCLKTSLKVLTITNCVLLESDLKHLSQCPSISQLKTLDLSGIRLTNYSLVPLQILLEKVAA
TLEYLDLDDCGIIDSQVNAILPALSRCFELNTFSFCGNPISMATLENLLSHTIILKNLCVELYPAPRESY
DADGTLCWSRFPQIRAELMKRVRDLRHPKRILFCTDCCPDCGNRSFYDLEADQCCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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