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Report for CCDS30482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30482.1 Public Mus musculus X Ubqln2 23 108 98 CCDS HistoryNCBI Gene:54609Re-query CCDS DB by CCDS ID:30482.1Re-query CCDS DB by GeneID:54609See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060714.9 ENSMUSP00000056888.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060714.9Link to Ensembl Protein Viewer:ENSMUSP00000056888.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060714Re-query CCDS DB by Protein ID:ENSMUSP00000056888
Original member Current member NCBI NM_018798.2 NP_061268.2 Accepted alive Link to Nucleotide Sequence:NM_018798.2Link to Protein Sequence:NP_061268.2Re-query CCDS DB by Nucleotide ID:NM_018798Re-query CCDS DB by Protein ID:NP_061268Link to BLAST:NP_061268.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061268.2 638 Q9QZM0 638 100% 0 0

Chromosomal Locations for CCDS 30482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153498454 153500370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGCTGAGAACGGCGAGAGCAGCGGCCCCCCGCGCCCCTCCCGCGGCCCTGCGGCGGCCCCAGGCGCGG
CCAGCCCGCCGGCCGAGCCCAAAATCATCAAAGTCACTGTGAAGACCCCCAAAGAGAAGGAGGAGTTCGC
GGTGCCCGAGAACAGCACCGTGCAGCAGTTCAAGGAAGCGATTTCCAAACGCTTCAAATCGCAGACCGAT
CAGCTCGTGCTGATTTTCGCCGGAAAGATCCTGAAAGATCAAGATACCTTGATGCAGCATGGCATCCATG
ATGGACTGACTGTTCACCTGGTTATCAAAAGCCAGAACCGTCCGCAGGGCCAGGCCACCACGCAGCCCAG
CACGACTGCGGGAACGAGCACGACGACCACGACCACCACCACGGCGGCGGCGCCGGCGGCGACGACATCA
TCGGCTCCCAGGAGTAGCTCCACACCTACCACCACGAATAGCAGCTCCTTTGGGCTGGGAAGCCTTTCCA
GCCTTAGTAACCTGGGCTTGAACTCGCCCAACTTCACCGAGCTTCAGAACCAGATGCAGCAGCAGCTCCT
GGCCAGCCCTGAGATGATGATCCAGATCATGGAAAATCCCTTTGTTCAGAGCATGCTTTCGAATCCTGAT
CTGATGAGGCAGCTCATCATGGCCAATCCACAGATGCAACAATTGATCCAGAGAAACCCAGAAATCAGCC
ACCTACTGAACAACCCAGATATAATGAGGCAGACGCTGGAAATCGCCAGGAATCCTGCCATGATGCAAGA
GATGATGCGAAATCAAGACCTGGCTCTCAGTAATCTCGAAAGCATCCCAGGTGGCTACAATGCTCTGCGG
CGCATGTACACTGACATTCAAGAACCTATGCTGAATGCCGCACAGGAGCAGTTTGGGGGCAACCCGTTTG
CCACGGTGGGGAGCAGTTCCACCTCAGGGGAAGGTACTCAGCCCTCCCGCACGGAGAATCGTGATCCGCT
GCCCAATCCTTGGGCACCACCGCCAACAACCCAGACGGCTGCGACCACCACCACCACCACGACCACAAGC
AGTGGCAGTGGCTCTGGCAGCAGCTCCAGCAGCACCACCGCCGGGAACACCATGGCTGCAGCTAATTACG
TGGCTAGCATCTTCAGCACCCCAGGAATGCAGAGCCTGCTGCAGCAGATAACTGAGAATCCCCAGCTGAT
TCAGAATATGCTGTCTGCGCCCTACATGCGGAGCATGATGCAGTCGCTGAGCCAGAATCCAGATATGGCG
GCCCAGATGATGCTGAGTAGCCCGCTGTTCACTTCGAATCCTCAGCTGCAGGAGCAGATGCGTCCACAGC
TCCCGAATTTCCTGCAGCAGATGCAGAATCCAGAAACCATCGCGGCCATGTCAAACCCGAGAGCGATGCA
AGCGCTAATGCAGATCCAGCAGGGGCTACAGACTCTAGCCACTGAAGCACCTGGCCTCATTCCCAGCTTC
GCTCCAGGTGTGGGGATGGGAGTGCTGGGAACCGCCATAACCCCTGTGGGCCCAGTCACTCCCATAGGGC
CCATCGGCCCTATAGTTCCTTTCACCCCCATAGGCCCCATCGGGCCTATAGGACCCACTGGCCCTGCAAG
CTCCCCCGGCTCCACCGGCACTGGCATCCCGCCTGCAACCACTGTGTCCAGCTCTGCACCTACTGAAACC
ATAAGTCCAACCTCGGAATCTGGACCCAACCAGCAGTTCATTCAACAAATGGTGCAGGCTCTCACTGGAG
GAAGCCCTCCACAGCCGCCGAATCCTGAAGTGAGATTTCAGCAGCAACTGGAACAGCTCAACGCCATGGG
GTTCTTAAACCGCGAAGCAAACTTGCAGGCCCTAATAGCAACAGGAGGCGACATCAACGCGGCCATTGAG
AGGCTGCTGGGCTCTCAGCCATCCTAA

Translation (638 aa):
MAENGESSGPPRPSRGPAAAPGAASPPAEPKIIKVTVKTPKEKEEFAVPENSTVQQFKEAISKRFKSQTD
QLVLIFAGKILKDQDTLMQHGIHDGLTVHLVIKSQNRPQGQATTQPSTTAGTSTTTTTTTTAAAPAATTS
SAPRSSSTPTTTNSSSFGLGSLSSLSNLGLNSPNFTELQNQMQQQLLASPEMMIQIMENPFVQSMLSNPD
LMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALR
RMYTDIQEPMLNAAQEQFGGNPFATVGSSSTSGEGTQPSRTENRDPLPNPWAPPPTTQTAATTTTTTTTS
SGSGSGSSSSSTTAGNTMAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDMA
AQMMLSSPLFTSNPQLQEQMRPQLPNFLQQMQNPETIAAMSNPRAMQALMQIQQGLQTLATEAPGLIPSF
APGVGMGVLGTAITPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPASSPGSTGTGIPPATTVSSSAPTET
ISPTSESGPNQQFIQQMVQALTGGSPPQPPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAIE
RLLGSQPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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