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Report for CCDS56818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56818.1 Public Mus musculus 11 Mif4gd 23 108 98 CCDS HistoryNCBI Gene:69674Re-query CCDS DB by CCDS ID:56818.1Re-query CCDS DB by GeneID:69674See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106506.7 ENSMUSP00000102115.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106506.7Link to Ensembl Protein Viewer:ENSMUSP00000102115.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106506Re-query CCDS DB by Protein ID:ENSMUSP00000102115
Original member Current member NCBI NM_001243586.1 NP_001230515.1 Accepted alive Link to Nucleotide Sequence:NM_001243586.1Link to Protein Sequence:NP_001230515.1Re-query CCDS DB by Nucleotide ID:NM_001243586Re-query CCDS DB by Protein ID:NP_001230515Link to BLAST:NP_001230515.1
Original member Current member NCBI NM_001243587.1 NP_001230516.1 Accepted alive Link to Nucleotide Sequence:NM_001243587.1Link to Protein Sequence:NP_001230516.1Re-query CCDS DB by Nucleotide ID:NM_001243587Re-query CCDS DB by Protein ID:NP_001230516Link to BLAST:NP_001230516.1

Chromosomal Locations for CCDS 56818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115608386 115608613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115609061 115609096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115609280 115609435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115609539 115609648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115611903 115611984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGAGCGAGGCCAGTAGAGATGATTATAAAATCCAGTCTTTTGATGCAGAGACGCAGCAGCTGCTGAAGA
CCGCGCTCAAAGATCCAGGTGCTGTGGACTTAGAGAGAGTAGCCAACGTGATTGTGGACCATTCTCTGCA
GGACTGTGTATTCAGCAAGGAAGCAGGACGCATGTGCTACGCCATCATTCAGGCAGAGAGTAAGCAAGCG
GGCCAGAGCGTCTTCCGCCGTGGGCTCCTCAACCGGCTGCAGAAGGAGTATGATGCGCGGGAGCAGCTCC
GAGCATGCTCCCTGCAGGGCTGGGTCTGCTATGTCACCTTTATCTGCAACATCTTTGACTACCTGAGGCT
GGCCCAGCCTGAGAGTCTGAGCAGGGAAGAGGAGGTGGACTGCCTGGTGCTGCAGCTGCACCGGGTCGGG
GAGCAGCTGGAGAAGATGAACGGGCAGCGCATGGATGAGCTCTTTATCCTAATCCGGGACGGCTTCCTGC
TCCCGACAGACCTCAGCTCCCTGGCACGGCTGCTGCTGCTGGAGATGATTGAGTTCCGGGCAGCTGGCTG
GAAGACCACTCCTGCTGCCCACAAGTATTACTACAGTGAGGTCTCTGACTAA

Translation (203 aa):
MSEASRDDYKIQSFDAETQQLLKTALKDPGAVDLERVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQA
GQSVFRRGLLNRLQKEYDAREQLRACSLQGWVCYVTFICNIFDYLRLAQPESLSREEEVDCLVLQLHRVG
EQLEKMNGQRMDELFILIRDGFLLPTDLSSLARLLLLEMIEFRAAGWKTTPAAHKYYYSEVSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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