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Report for CCDS58211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58211.1 Public Homo sapiens 12 LMO3 24 110 108 CCDS HistoryNCBI Gene:55885Re-query CCDS DB by CCDS ID:58211.1Re-query CCDS DB by GeneID:55885See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261169.10 ENSP00000261169.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261169.10Link to Ensembl Protein Viewer:ENSP00000261169.6Re-query CCDS DB by Nucleotide ID:ENST00000261169Re-query CCDS DB by Protein ID:ENSP00000261169
Original member Current member NCBI NM_001243611.1 NP_001230540.1 Accepted alive Link to Nucleotide Sequence:NM_001243611.1Link to Protein Sequence:NP_001230540.1Re-query CCDS DB by Nucleotide ID:NM_001243611Re-query CCDS DB by Protein ID:NP_001230540Link to BLAST:NP_001230540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230540.1 156 Q8TAP4-3 156 100% 0 0

Chromosomal Locations for CCDS 58211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16551222 16551327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16560413 16560538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16600655 16600868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16604865 16604889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGCAGAAAAAGGAGAAAAGTTTTGGTATACAAATGCTCTCAGTCCAGCCAGACACCAAGCCGAAAGGTT
GTGCTGGCTGCAACCGAAAGATCAAGGACCGGTATCTTCTAAAGGCACTGGACAAATACTGGCATGAAGA
CTGCCTGAAGTGTGCCTGCTGTGACTGTCGCTTGGGAGAGGTGGGCTCCACCCTGTACACTAAAGCTAAT
CTTATCCTTTGTCGCAGAGACTATCTGAGGCTCTTTGGTGTAACGGGAAACTGCGCTGCCTGTAGTAAGC
TCATCCCTGCCTTTGAGATGGTGATGCGTGCCAAGGACAATGTTTACCACCTGGACTGCTTTGCATGTCA
GCTTTGTAATCAGAGATTTTGTGTTGGAGACAAATTTTTCCTAAAGAATAACATGATCCTTTGCCAGACG
GACTACGAGGAAGGTTTAATGAAAGAAGGTTATGCACCCCAGGTTCGCTGA

Translation (156 aa):
MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKAN
LILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQT
DYEEGLMKEGYAPQVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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