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Report for CCDS3128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3128.1 Public Homo sapiens 3 PAQR9 24 110 108 CCDS HistoryNCBI Gene:344838Re-query CCDS DB by CCDS ID:3128.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3128.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340634.6 ENSP00000341564.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340634.6Link to Ensembl Protein Viewer:ENSP00000341564.4Re-query CCDS DB by Nucleotide ID:ENST00000340634Re-query CCDS DB by Protein ID:ENSP00000341564
Original member Current member NCBI NM_198504.4 NP_940906.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198504.4Link to Protein Sequence:NP_940906.1Re-query CCDS DB by Nucleotide ID:NM_198504Re-query CCDS DB by Protein ID:NP_940906Link to BLAST:NP_940906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940906.1 377 Q6ZVX9 377 100% 0 0

Chromosomal Locations for CCDS 3128.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142962203 142963336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGCCGCGGCGCCTGCAGCCCCGGGGCGCGGGCACAAAAGGCCCTCCGGCCCCGGCCCCGGCAGCTTCGG
GGGCCGCCCGGAACTCCCACTCTGCCGCCTCCCGGGACCCCCCAGCGTCTGCCAAGCCGCTGCTGCGCTG
GGACGAGGTGCCCGACGACTTCGTGGAGTGCTTCATCCTGTCGGGCTACCGGCGTCTGCCGTGCACGGCC
CAGGAGTGCCTAGCCTCGGTGCTGAAGCCTACCAACGAGACGCTCAACTTCTGGACGCACTTCATCCCGC
TGCTGCTGTTCCTGAGCAAGTTCTGCCGTCTGTTCTTCCTGAGCGGCGGCGACGTGCCCTTCCACCACCC
GTGGCTGCTACCGTTGTGGTGCTACGCGTCGGGAGTGCTGCTGACCTTCGCCATGAGCTGCACGGCGCAC
GTGTTCAGCTGCCTGTCGCTGCGTCTGCGCGCCGCCTTCTTCTACCTGGACTACGCGTCCATCAGCTACT
ACGGCTTCGGCAGCACGGTGGCCTACTACTACTACCTGTTGCCAGGCCTCAGCTTGCTGGATGCCAGAGT
CATGACTCCATACTTGCAGCAGCGCCTGGGCTGGCACGTGGACTGCACGCGCCTTATCGCCGCCTACCGC
GCCCTGGTGCTGCCTGTGGCCTTCGTGCTGGCGGTGGCTTGCACTGTGGCCTGCTGCAAGAGCCGTACCG
ACTGGTGTACCTACCCGTTCGCGCTGCGCACCTTCGTCTTCGTCATGCCGCTCAGCATGGCCTGCCCCAT
TATGCTCGAGAGCTGGCTCTTCGACCTGCGTGGGGAGAACCCCACACTCTTCGTGCACTTCTACCGCCGC
TACTTCTGGCTGGTGGTGGCCGCCTTCTTCAACGTGAGCAAGATCCCCGAGCGCATCCAGCCGGGTCTTT
TCGACATTATCGGCCACAGCCACCAGCTCTTCCACATCTTCACCTTCCTCAGCATCTACGACCAGGTGTA
CTACGTAGAAGAGGGCCTGCGCCAGTTCCTCCAGGCGCCGCCTGCCGCACCCACTTTCTCGGGTACTGTG
GGCTACATGCTGCTGCTGGTGGTCTGCCTGGGGCTGGTAATCAGGAAGTTCCTAAACAGCTCCGAATTCT
GCAGTAAAAAGTGA

Translation (377 aa):
MPRRLQPRGAGTKGPPAPAPAASGAARNSHSAASRDPPASAKPLLRWDEVPDDFVECFILSGYRRLPCTA
QECLASVLKPTNETLNFWTHFIPLLLFLSKFCRLFFLSGGDVPFHHPWLLPLWCYASGVLLTFAMSCTAH
VFSCLSLRLRAAFFYLDYASISYYGFGSTVAYYYYLLPGLSLLDARVMTPYLQQRLGWHVDCTRLIAAYR
ALVLPVAFVLAVACTVACCKSRTDWCTYPFALRTFVFVMPLSMACPIMLESWLFDLRGENPTLFVHFYRR
YFWLVVAAFFNVSKIPERIQPGLFDIIGHSHQLFHIFTFLSIYDQVYYVEEGLRQFLQAPPAAPTFSGTV
GYMLLLVVCLGLVIRKFLNSSEFCSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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