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Report for CCDS7368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7368.1 Public Homo sapiens 10 PRXL2A 24 110 108 CCDS HistoryNCBI Gene:84293Re-query CCDS DB by CCDS ID:7368.1Re-query CCDS DB by GeneID:84293See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7368.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372181.1 ENSP00000361254.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372181.1Link to Ensembl Protein Viewer:ENSP00000361254.1Re-query CCDS DB by Nucleotide ID:ENST00000372181Re-query CCDS DB by Protein ID:ENSP00000361254
Original member Current member EBI ENST00000372187.9 ENSP00000361261.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372187.9Link to Ensembl Protein Viewer:ENSP00000361261.5Re-query CCDS DB by Nucleotide ID:ENST00000372187Re-query CCDS DB by Protein ID:ENSP00000361261
Original member Current member EBI ENST00000372188.5 ENSP00000361262.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372188.5Link to Ensembl Protein Viewer:ENSP00000361262.1Re-query CCDS DB by Nucleotide ID:ENST00000372188Re-query CCDS DB by Protein ID:ENSP00000361262
Original member Current member EBI ENST00000615554.4 ENSP00000478152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615554.4Link to Ensembl Protein Viewer:ENSP00000478152.1Re-query CCDS DB by Nucleotide ID:ENST00000615554Re-query CCDS DB by Protein ID:ENSP00000478152
Original member Current member EBI ENST00000606162.6 ENSP00000482445.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000606162.6Link to Ensembl Protein Viewer:ENSP00000482445.1Re-query CCDS DB by Nucleotide ID:ENST00000606162Re-query CCDS DB by Protein ID:ENSP00000482445
Original member Current member NCBI NM_001243778.2 NP_001230707.1 Accepted alive Link to Nucleotide Sequence:NM_001243778.2Link to Protein Sequence:NP_001230707.1Re-query CCDS DB by Nucleotide ID:NM_001243778Re-query CCDS DB by Protein ID:NP_001230707Link to BLAST:NP_001230707.1
Original member Current member NCBI NM_001243779.2 NP_001230708.1 Accepted alive Link to Nucleotide Sequence:NM_001243779.2Link to Protein Sequence:NP_001230708.1Re-query CCDS DB by Nucleotide ID:NM_001243779Re-query CCDS DB by Protein ID:NP_001230708Link to BLAST:NP_001230708.1
Original member Current member NCBI NM_001243780.2 NP_001230709.1 Accepted alive Link to Nucleotide Sequence:NM_001243780.2Link to Protein Sequence:NP_001230709.1Re-query CCDS DB by Nucleotide ID:NM_001243780Re-query CCDS DB by Protein ID:NP_001230709Link to BLAST:NP_001230709.1
Original member Current member NCBI NM_032333.5 NP_115709.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032333.5Link to Protein Sequence:NP_115709.3Re-query CCDS DB by Nucleotide ID:NM_032333Re-query CCDS DB by Protein ID:NP_115709Link to BLAST:NP_115709.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230707.1 229 Q9BRX8-1 229 100% 0 0
NP_001230708.1 229 Q9BRX8-1 229 100% 0 0
NP_001230709.1 229 Q9BRX8-1 229 100% 0 0
NP_115709.3 229 Q9BRX8-1 229 100% 0 0

Chromosomal Locations for CCDS 7368.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80420468 80420645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80422417 80422508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80425866 80426006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80427332 80427496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80431986 80432099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGG
CTGCTGCCTTGGCATTGCTGCTTGCCAACACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGA
GTACCTGGAGGATATAGACCTGAAAACACTGGAGAAGGAACCAAGGACTTTCAAAGCAAAGGAGCTATGG
GAAAAAAATGGAGCTGTGATTATGGCCGTGCGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCGG
ATCTGTCCTCCCTGAAAAGCATGTTGGACCAGCTGGGCGTCCCCCTCTATGCAGTGGTAAAGGAGCACAT
CAGGACTGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGATGAAAAGAAAAAGTTC
TATGGTCCACAAAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTGTGGTACAACTTCTTCC
GAGCCTGGAACGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCGTGGT
GGGATCAGGAAAGCAGGGCATTCTTCTTGAGCACCGAGAAAAAGAATTTGGAGACAAAGTAAACCTACTT
TCTGTTCTGGAAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGAAAAAATGA

Translation (229 aa):
MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELW
EKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEKKKF
YGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKEFGDKVNLL
SVLEAAKMIKPQTLASEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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