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Report for CCDS47352.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
47352.1 |
Public |
Homo sapiens |
5 |
ZNF879 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:345462](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:47352.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 47352.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000444149.7 |
ENSP00000414887.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000444149.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000414887.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000444149](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000414887](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001136116.3 |
NP_001129588.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001136116.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001129588.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001136116](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001129588](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001129588.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001353372.2 |
NP_001340301.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001353372.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001340301.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001353372](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001340301](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001340301.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001353373.2 |
NP_001340302.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001353373.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001340302.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001353373](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001340302](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001340302.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001353374.2 |
NP_001340303.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001353374.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001340303.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001353374](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001340303](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001340303.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 47352.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1692 nt): ATGGCAAGGAGGTTGCTGCCAGCCCATGTACAGGAGTCCGTGACGTTCAGGGATGTGGCCGTGTTCTTCA GCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGAGCCTTGTACCGGGAGGTGATGCTGGAGAACTA CAGCATCCTGGTCTCACTGGGGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAA GACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCGGATGGGAAAGCTTGTTTGGAACCA TAGTTTCTAAAGAAGAAAATCAGGAAGTCATGAAAAAACTCATAATTGATGGCACATTTGACTTCAAGTT GGAGAAGACCTACATAAATGAAGATAAGTTAGAGAAGCAACAAGGCAAAAAGAACAGACTTTTCAGTAAA GTGTTAGTTACCATCAAAAAAGTCTACATGAAGGAGAGGAGCTTTAAAGGTGTTGAATTTGGGAAAAATC TTGGTCTAAAATCATCGCTTATTAGAAAACCGAGAATAGTTTCCAGAGGAAGGAGACCCCGTTCACAGCA GTATTCAGTTCTCTTTAAACAACTGGGGGTCAACACAGTGCGTAAATGTTATAAATGTAATATCTGTGGG AAAATCTTCCTCCACAGTTCCTCCCTGAGTAAACACCAGAGAATCCACACTGGAGAGAAGCTCTATAAAT GTAAGGAATGTAGGAAAGCCTTCAGCCAAAGCTCATCCCTAACTCAGCACTTGAGGGTTCATACAGGAGA GAAACCTTATATATGTAGTGAATGTGGAAAAGCCTTCAGTTTCACCACATCTCTTATTGGACACCAGAGA ATGCATACTGGAGAGAGACCTTATAAATGCAAGGAATGTGGAAAAACATTTAAAGGTAGTTCATCTCTTA ATAATCACCAGCGAATTCACACAGGAGAGAAGCCCTATAAGTGTAATGAATGTGGGAGGGCCTTCAGTCA GTGCTCATCTCTCATTCAGCACCACAGAATTCATACTGGGGAGAAACCGTATGAATGTACTCAGTGTGGG AAAGCCTTCACTTCAATATCGCGGCTAAGTAGGCACCATCGAATTCATACTGGAGAGAAACCCTTTCATT GTAACGAGTGTGGAAAAGTATTCAGCTATCACTCAGCCCTTATCATACATCAGAGAATTCACACTGGTGA GAAACCATATGCATGCAAAGAATGTGGGAAAGCCTTCAGCCAAAGCTCAGCTCTCATACAACATCAAAGA ATTCACACTGGAGAAAAACCCTACAAATGTAATGAATGTGGGAAAGCCTTCTCTTGGATTTCACGGCTTA ATATACATCACAGAATTCACACTGGAGAGAAACCATATAATTGTAAGGAATGTGGAAAAGCCTTCAGTTC CCACTCAGGCGTTAATACTCATCGAAAAATTCATACTGGAGAAAAACCTTATAAATGTAATGACTGTGAG AAAGCCTTCAACCAAAGCTCAGCTCTAATTCAGCACCAGAGAATTCATACTGGAGAGAAACCATATAATT GTAAAGTGTGTGGGAAAGCCTTCAGACAGAGTTCATCCCTTATGACACACATGAGAATTCATACAGGGGA AAAACCTTATAAATGTAAAGAATGTGGGAAGGCTTTTAGTCAGAGCTCATCTCTTACTAATCATCAAAGG ACTCATAATTGA
Translation (563 aa): MARRLLPAHVQESVTFRDVAVFFSQDEWLHLDSAQRALYREVMLENYSILVSLGILFSKPKVISQLEQGE DPWMVESGVPQGAHLGWESLFGTIVSKEENQEVMKKLIIDGTFDFKLEKTYINEDKLEKQQGKKNRLFSK VLVTIKKVYMKERSFKGVEFGKNLGLKSSLIRKPRIVSRGRRPRSQQYSVLFKQLGVNTVRKCYKCNICG KIFLHSSSLSKHQRIHTGEKLYKCKECRKAFSQSSSLTQHLRVHTGEKPYICSECGKAFSFTTSLIGHQR MHTGERPYKCKECGKTFKGSSSLNNHQRIHTGEKPYKCNECGRAFSQCSSLIQHHRIHTGEKPYECTQCG KAFTSISRLSRHHRIHTGEKPFHCNECGKVFSYHSALIIHQRIHTGEKPYACKECGKAFSQSSALIQHQR IHTGEKPYKCNECGKAFSWISRLNIHHRIHTGEKPYNCKECGKAFSSHSGVNTHRKIHTGEKPYKCNDCE KAFNQSSALIQHQRIHTGEKPYNCKVCGKAFRQSSSLMTHMRIHTGEKPYKCKECGKAFSQSSSLTNHQR THN
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