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Report for CCDS1966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1966.1 Public Homo sapiens 2 LRRTM1 24 110 108 CCDS HistoryNCBI Gene:347730Re-query CCDS DB by CCDS ID:1966.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295057.4 ENSP00000295057.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295057.4Link to Ensembl Protein Viewer:ENSP00000295057.3Re-query CCDS DB by Nucleotide ID:ENST00000295057Re-query CCDS DB by Protein ID:ENSP00000295057
Original member Current member EBI ENST00000409148.1 ENSP00000386646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409148.1Link to Ensembl Protein Viewer:ENSP00000386646.1Re-query CCDS DB by Nucleotide ID:ENST00000409148Re-query CCDS DB by Protein ID:ENSP00000386646
Original member Current member EBI ENST00000417012.5 ENSP00000393562.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417012.5Link to Ensembl Protein Viewer:ENSP00000393562.1Re-query CCDS DB by Nucleotide ID:ENST00000417012Re-query CCDS DB by Protein ID:ENSP00000393562
Original member Current member EBI ENST00000433224.1 ENSP00000414523.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433224.1Link to Ensembl Protein Viewer:ENSP00000414523.1Re-query CCDS DB by Nucleotide ID:ENST00000433224Re-query CCDS DB by Protein ID:ENSP00000414523
Original member Current member NCBI NM_178839.5 NP_849161.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178839.5Link to Protein Sequence:NP_849161.2Re-query CCDS DB by Nucleotide ID:NM_178839Re-query CCDS DB by Protein ID:NP_849161Link to BLAST:NP_849161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849161.2 522 Q86UE6 522 100% 0 0

Chromosomal Locations for CCDS 1966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 80302251 80303819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGATTTCCTGCTGCTCGGTCTCTGTCTATACTGGCTGCTGAGGAGGCCCTCGGGGGTGGTCTTGTGTC
TGCTGGGGGCCTGCTTTCAGATGCTGCCCGCCGCCCCCAGCGGGTGCCCGCAGCTGTGCCGGTGCGAGGG
GCGGCTGCTGTACTGCGAGGCGCTCAACCTCACCGAGGCGCCCCACAACCTGTCCGGCCTGCTGGGCTTG
TCCCTGCGCTACAACAGCCTCTCGGAGCTGCGCGCCGGCCAGTTCACGGGGTTAATGCAGCTCACGTGGC
TCTATCTGGATCACAATCACATCTGCTCCGTGCAGGGGGACGCCTTTCAGAAACTGCGCCGAGTTAAGGA
ACTCACGCTGAGTTCCAACCAGATCACCCAACTGCCCAACACCACCTTCCGGCCCATGCCCAACCTGCGC
AGCGTGGACCTCTCGTACAACAAGCTGCAGGCGCTCGCGCCCGACCTCTTCCACGGGCTGCGGAAGCTCA
CCACGCTGCATATGCGGGCCAACGCCATCCAGTTTGTGCCCGTGCGCATCTTCCAGGACTGCCGCAGCCT
CAAGTTTCTCGACATCGGATACAATCAGCTCAAGAGTCTGGCGCGCAACTCTTTCGCCGGCTTGTTTAAG
CTCACCGAGCTGCACCTCGAGCACAACGACTTGGTCAAGGTGAACTTCGCCCACTTCCCGCGCCTCATCT
CCCTGCACTCGCTCTGCCTGCGGAGGAACAAGGTGGCCATTGTGGTCAGCTCGCTGGACTGGGTTTGGAA
CCTGGAGAAAATGGACTTGTCGGGCAACGAGATCGAGTACATGGAGCCCCATGTGTTCGAGACCGTGCCG
CACCTGCAGTCCCTGCAGCTGGACTCCAACCGCCTCACCTACATCGAGCCCCGGATCCTCAACTCTTGGA
AGTCCCTGACAAGCATCACCCTGGCCGGGAACCTGTGGGATTGCGGGCGCAACGTGTGTGCCCTAGCCTC
GTGGCTCAACAACTTCCAGGGGCGCTACGATGGCAACTTGCAGTGCGCCAGCCCGGAGTACGCACAGGGC
GAGGACGTCCTGGACGCCGTGTACGCCTTCCACCTGTGCGAGGATGGGGCCGAGCCCACCAGCGGCCACC
TGCTCTCGGCCGTCACCAACCGCAGTGATCTGGGGCCCCCTGCCAGCTCGGCCACCACGCTCGCGGACGG
CGGGGAGGGGCAGCACGACGGCACATTCGAGCCTGCCACCGTGGCTCTTCCAGGCGGCGAGCACGCCGAG
AACGCCGTGCAGATCCACAAGGTGGTCACGGGCACCATGGCCCTCATCTTCTCCTTCCTCATCGTGGTCC
TGGTGCTCTACGTGTCCTGGAAGTGTTTCCCAGCCAGCCTCAGGCAGCTCAGACAGTGCTTTGTCACGCA
GCGCAGGAAGCAAAAGCAGAAACAGACCATGCATCAGATGGCTGCCATGTCTGCCCAGGAATACTACGTT
GATTACAAACCGAACCACATTGAGGGAGCCCTGGTGATCATCAACGAGTATGGCTCGTGTACCTGCCACC
AGCAGCCCGCGAGGGAATGCGAGGTGTGA

Translation (522 aa):
MDFLLLGLCLYWLLRRPSGVVLCLLGACFQMLPAAPSGCPQLCRCEGRLLYCEALNLTEAPHNLSGLLGL
SLRYNSLSELRAGQFTGLMQLTWLYLDHNHICSVQGDAFQKLRRVKELTLSSNQITQLPNTTFRPMPNLR
SVDLSYNKLQALAPDLFHGLRKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYNQLKSLARNSFAGLFK
LTELHLEHNDLVKVNFAHFPRLISLHSLCLRRNKVAIVVSSLDWVWNLEKMDLSGNEIEYMEPHVFETVP
HLQSLQLDSNRLTYIEPRILNSWKSLTSITLAGNLWDCGRNVCALASWLNNFQGRYDGNLQCASPEYAQG
EDVLDAVYAFHLCEDGAEPTSGHLLSAVTNRSDLGPPASSATTLADGGEGQHDGTFEPATVALPGGEHAE
NAVQIHKVVTGTMALIFSFLIVVLVLYVSWKCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSAQEYYV
DYKPNHIEGALVIINEYGSCTCHQQPARECEV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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