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Report for CCDS43120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43120.1 Public Homo sapiens 3 LNP1 24 110 108 CCDS HistoryNCBI Gene:348801Re-query CCDS DB by CCDS ID:43120.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43120.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383693.8 ENSP00000373191.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383693.8Link to Ensembl Protein Viewer:ENSP00000373191.3Re-query CCDS DB by Nucleotide ID:ENST00000383693Re-query CCDS DB by Protein ID:ENSP00000373191
Original member Current member NCBI NM_001085451.2 NP_001078920.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085451.2Link to Protein Sequence:NP_001078920.1Re-query CCDS DB by Nucleotide ID:NM_001085451Re-query CCDS DB by Protein ID:NP_001078920Link to BLAST:NP_001078920.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078920.1 178 A1A4G5 178 100% 0 0

Chromosomal Locations for CCDS 43120.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100429730 100429885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100451719 100451949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100455777 100455926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGAGCACAAAGATGATGATGATGATGATGTGTCTTTTGCCAAATGGATGAGCAGCTTCTGGGGCCACA
GCTGGAGAGAGGAGGATCAGAGAGGACTCCGGGAACGCCACCGACTGCAAGCCACCAGTCACAGGAAAAC
CTCCCTGCCCTGCCCACTTCCTGTGCTTCCCAGAATTCCATCATCTGACTGCCATCCTAGAAGGCATTCT
CATGAGGACCAAGAATTTCGATGCCGTAGCCACGTACGGGATTACAGAAAATACTCAGAGGATGGGTCAT
TCAAGGAGCCACTGGAATCAAAAGGAAGATCCCATTCCAAAATTGAGAAATTTTCAGAGTCCTTTGAACG
GCAACTGTGCTTTAGAACCAAGCGTTCTGCCTCTTTGGGACCTGAAAGCAGAAAGGAGAGAAATGAAAGA
GAATGCCTGAGGATGGAGATAAAATCCCGAAAGAAAGTAGAGGAAGAAAGGAGCTCTAGGAAAGAAGAGC
ATGGAGAAGCACACATGGCTCCCCTGTTTGAAAAAGGGCCTGAATAA

Translation (178 aa):
MEHKDDDDDDVSFAKWMSSFWGHSWREEDQRGLRERHRLQATSHRKTSLPCPLPVLPRIPSSDCHPRRHS
HEDQEFRCRSHVRDYRKYSEDGSFKEPLESKGRSHSKIEKFSESFERQLCFRTKRSASLGPESRKERNER
ECLRMEIKSRKKVEEERSSRKEEHGEAHMAPLFEKGPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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