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Report for CCDS3360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3360.1 Public Homo sapiens 4 POLN 24 110 108 CCDS HistoryNCBI Gene:353497Re-query CCDS DB by CCDS ID:3360.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382865.5 ENSP00000372316.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382865.5Link to Ensembl Protein Viewer:ENSP00000372316.1Re-query CCDS DB by Nucleotide ID:ENST00000382865Re-query CCDS DB by Protein ID:ENSP00000372316
Original member Current member EBI ENST00000511885.6 ENSP00000435506.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000511885.6Link to Ensembl Protein Viewer:ENSP00000435506.1Re-query CCDS DB by Nucleotide ID:ENST00000511885Re-query CCDS DB by Protein ID:ENSP00000435506
Original member Current member NCBI NM_181808.4 NP_861524.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181808.4Link to Protein Sequence:NP_861524.2Re-query CCDS DB by Nucleotide ID:NM_181808Re-query CCDS DB by Protein ID:NP_861524Link to BLAST:NP_861524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861524.2 900 Q7Z5Q5-1 900 100% 0 0

Chromosomal Locations for CCDS 3360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2072114 2072299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2072968 2073029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2075452 2075519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2080958 2081036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2081633 2081743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2085613 2085744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2095851 2095933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2128113 2128227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2129179 2129256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2131233 2131290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2156788 2156853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2157858 2157911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2159155 2159211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2170679 2170774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2171098 2171181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2173955 2174019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2174691 2174751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2176266 2176334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2179308 2179465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2193204 2193316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2198524 2198717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2207987 2208487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2213047 2213126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2229099 2229231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGGAAAATTATGAGGCATTGGTAGGCTTTGATCTCTGTAATACACCGCTCTCCAGTGTTGCTCAGAAGA
TTATGTCTGCTATGCATTCAGGTGATTTAGTGGATTCTAAGACTTGGGGAAAGAGTACAGAGACTATGGA
AGTGATAAACAAGTCCAGTGTTAAGTATTCAGTACAACTTGAAGACAGGAAGACTCAATCACCAGAAAAA
AAGGATCTTAAATCTTTAAGAAGTCAGACATCAAGAGGTTCTGCCAAGCTGTCTCCTCAGTCCTTCAGTG
TCAGGCTCACAGATCAGCTGTCTGCTGACCAAAAACAGAAGAGCATCAGCTCATTGACTCTTTCAAGTTG
TTTAATTCCACAGTATAATCAAGAGGCTTCAGTTCTACAGAAAAAGGGGCATAAAAGAAAGCATTTCCTA
ATGGAGAATATAAATAATGAAAATAAAGGAAGCATTAATCTTAAAAGAAAACATATTACATATAATAATT
TGTCAGAGAAAACAAGTAAACAAATGGCATTGGAAGAAGATACTGATGACGCCGAAGGCTACCTAAATTC
TGGGAACTCAGGAGCATTGAAAAAACATTTTTGTGATATTAGGCATTTGGATGATTGGGCAAAAAGCCAG
CTGATTGAAATGCTCAAACAGGCAGCAGCCCTGGTGATAACTGTGATGTATACTGATGGTTCCACCCAGC
TAGGAGCTGACCAGACCCCCGTTTCTTCTGTTAGAGGAATTGTGGTGTTAGTAAAACGCCAAGCAGAGGG
TGGCCATGGCTGTCCAGATGCCCCGGCCTGTGGTCCTGTTCTGGAGGGCTTTGTGTCAGATGATCCATGC
ATCTACATTCAAATAGAGCACTCTGCTATCTGGGACCAAGAACAGGAGGCACATCAACAATTTGCCCGGA
ACGTGCTATTTCAAACAATGAAATGTAAATGTCCTGTTATTTGTTTTAATGCTAAGGATTTTGTGAGAAT
AGTGCTGCAGTTTTTTGGCAATGATGGCAGTTGGAAGCATGTTGCTGATTTTATAGGGCTAGATCCCAGA
ATTGCTGCATGGCTTATAGATCCTAGTGATGCCACACCCTCTTTTGAAGATTTAGTAGAAAAATACTGTG
AAAAATCCATTACAGTTAAAGTGAACAGCACATATGGAAATTCCTCAAGAAATATTGTGAATCAGAATGT
ACGTGAGAACCTGAAGACACTCTACAGACTTACAATGGACCTTTGCTCTAAACTGAAGGATTATGGTTTA
TGGCAACTATTTCGTACTTTGGAGCTTCCTCTGATACCAATTTTGGCAGTGATGGAAAGCCATGCCATTC
AGGTGAACAAAGAGGAGATGGAGAAGACGTCAGCACTTCTTGGGGCTCGTCTCAAGGAATTGGAGCAAGA
AGCTCATTTTGTTGCAGGAGAACGGTTTCTTATAACGAGCAATAACCAGCTTCGAGAGATCCTCTTTGGC
AAGTTAAAGCTGCACCTGCTGAGTCAAAGGAACAGTCTCCCCAGAACGGGGTTGCAGAAATACCCGTCTA
CATCAGAAGCAGTGTTAAATGCTCTGCGAGACCTTCATCCATTACCCAAGATAATTTTGGAATACAGGCA
GGTTCACAAGATCAAGTCAACCTTTGTAGATGGATTACTAGCTTGCATGAAAAAGGGCTCCATTTCCTCT
ACATGGAATCAGACTGGAACTGTGACTGGAAGACTTTCAGCCAAGCATCCTAATATCCAAGGTATCTCCA
AGCACCCAATTCAGATTACTACACCTAAGAATTTTAAAGGTAAAGAAGACAAGATTCTCACGATCTCCCC
GAGGGCCATGTTTGTTTCATCCAAAGGCCACACCTTTCTAGCAGCAGACTTTTCACAGATTGAATTGCGC
ATTCTTACACATTTATCTGGAGATCCGGAACTTCTGAAGTTATTCCAGGAATCTGAAAGAGATGATGTAT
TTTCTACTCTGACTTCACAGTGGAAGGATGTGCCCGTGGAACAGGTGACACACGCAGACAGAGAGCAAAC
CAAGAAGGTGGTGTACGCGGTGGTCTATGGAGCAGGGAAGGAGCGGCTGGCTGCTTGCCTTGGAGTTCCT
ATTCAGGAAGCTGCCCAGTTTTTGGAGAGTTTTTTGCAGAAGTACAAGAAAATCAAGGACTTCGCCCGAG
CAGCTATTGCCCAGTGTCACCAGACAGGCTGTGTGGTGTCCATCATGGGCAGAAGGAGACCCCTGCCAAG
GATTCACGCTCATGACCAGCAACTCCGGGCACAAGCAGAGCGACAGGCAGTGAACTTCGTGGTGCAAGGC
TCCGCTGCTGACCTCTGCAAGCTGGCCATGATCCATGTCTTCACTGCAGTGGCTGCTTCCCACACCTTGA
CGGCCAGGCTGGTGGCCCAGATCCATGATGAGCTGCTGTTTGAAGTGGAAGATCCGCAGATCCCGGAGTG
TGCAGCTCTCGTCAGGAGGACCATGGAGTCCTTGGAACAGGTGCAGGCATTGGAGCTGCAGCTTCAGGTA
CCCCTCAAGGTGAGCCTGAGTGCCGGCCGCTCATGGGGACACCTGGTGCCACTGCAGGAGGCCTGGGGCC
CTCCGCCAGGCCCATGTCGCACTGAGTCTCCCAGCAACAGCCTGGCTGCCCCTGGGTCCCCTGCCAGCAC
CCAGCCCCCACCCCTGCATTTTTCGCCTTCATTTTGTCTGTAG

Translation (900 aa):
MENYEALVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTETMEVINKSSVKYSVQLEDRKTQSPEK
KDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIPQYNQEASVLQKKGHKRKHFL
MENINNENKGSINLKRKHITYNNLSEKTSKQMALEEDTDDAEGYLNSGNSGALKKHFCDIRHLDDWAKSQ
LIEMLKQAAALVITVMYTDGSTQLGADQTPVSSVRGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPC
IYIQIEHSAIWDQEQEAHQQFARNVLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPR
IAAWLIDPSDATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGL
WQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILFG
KLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGSISS
TWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR
ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVP
IQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQG
SAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQV
PLKVSLSAGRSWGHLVPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPSFCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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