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Report for CCDS28107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28107.1 Public Mus musculus 16 Dlg1 23 108 98 CCDS HistoryNCBI Gene:13383Re-query CCDS DB by CCDS ID:28107.1Re-query CCDS DB by GeneID:13383See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064477.13 ENSMUSP00000064280.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064477.13Link to Ensembl Protein Viewer:ENSMUSP00000064280.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064477Re-query CCDS DB by Protein ID:ENSMUSP00000064280
Original member Current member NCBI NM_007862.3 NP_031888.2 Accepted alive Link to Nucleotide Sequence:NM_007862.3Link to Protein Sequence:NP_031888.2Re-query CCDS DB by Nucleotide ID:NM_007862Re-query CCDS DB by Protein ID:NP_031888Link to BLAST:NP_031888.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031888.2 927 Q811D0-3 927 100% 0 0

Chromosomal Locations for CCDS 28107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31664852 31664870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31665575 31665706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31684128 31684294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31743106 31743270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31771757 31771855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31781782 31781835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31788082 31788132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31790177 31790301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31791715 31791884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31793504 31793640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31796866 31797010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31805614 31805734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31812668 31812824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31829466 31829568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31836190 31836304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31838050 31838226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31842770 31842839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31846834 31846933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31853843 31853884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31856441 31856491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31857547 31857648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31857892 31858064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31863173 31863282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31867831 31867922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31871675 31871781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGCCGGTCCGGAAGCAAGATACCCAGAGAGCATTGCATCTGTTGGAAGAATATCGATCGAAACTAAGCC
AAACTGAAGACAGACAACTCAGAAGTTCCATAGAGCGGGTTATTAACATATTTCAGAGCAACCTCTTTCA
GGCTTTAATAGATATTCAAGAATTTTATGAAGTGACCTTACTTGATAATCCAAAATGTGTGGATCATTCA
AAGCAGTGTGAACCAGTTCAGCCTGTGACTACTTGGGAGATTGCCAGCCTTCCAAGCACTGCCGTGACGT
CAGAAACCCTGCCCGGCAGCCTTAGCCCTCCAGTAGAGAAATACCGGTATCAGGATGAAGAGGTACTTCC
TCCTGAGCATATTTCTCCACAAGTCACAAATGAGGTGCTAGGTCCAGAACTGGTCCATGTCTCAGAGAAG
AACCTGTCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCATATCTCACCAATAAAGCCCACAG
AAGCTGTTCCTCCCTCCTCTCCCATTGTCCCTGTGACCCCTGCCCTGCCAGTCCCTGCTGAGAGTACTGT
CGTCCTGCCCTCCGCACCACAGGCAAATCCTCCTCCAGTGCTGGTCAACACAGACAGCTTAGAGACACCA
ACTTATGTTAATGGCACTGATGCAGATTATGAATATGAGGAAATCACACTTGAAAGGGGAAATTCGGGTC
TTGGTTTCAGCATTGCAGGAGGTACAGACAACCCACACATTGGAGATGACTCAAGTATTTTCATCACCAA
AATTATCACAGGCGGAGCGGCTGCCCAGGATGGAAGATTGCGGGTAAATGACTGTATACTGAGAGTAAAT
GAAGCAGACGTTCGTGATGTAACCCACAGCAAAGCAGTGGAGGCATTAAAAGAAGCTGGATCTATTGTGC
GATTGTATGTGAAAAGGCGGAAGCCAGCATCAGAAAAAATCATGGAAATAAAGCTCATTAAAGGTCCTAA
AGGTCTTGGGTTCAGCATTGCTGGAGGTGTTGGAAATCAGCACATTCCTGGTGATAACAGCATCTATGTA
ACCAAAATAATTGAAGGAGGTGCAGCACACAAGGATGGCAAGCTTCAGATTGGAGATAAGCTTCTAGCAG
TGAACAGTGTGTGTTTAGAAGAAGTTACTCATGAAGAAGCAGTGACTGCCTTAAAGAATACATCTGATTT
TGTTTATTTGAAAGTGGCAAAACCAACAAGTATGTATATAAATGATGGCTATGCACCACCTGACATCACT
AATTCTTCTTCTCAATCTGTTGACAACCATGTCAGCCCGTCCTCCTGCTTGGGCCAGACGCCAACGTCAC
CAGCCAGGTACTCACCCATTTCTAAAGCTGTGCTCGGAGATGACGAGATCACTAGGGAACCTAGAAAAGT
TGTTCTTCATCGTGGCTCAACAGGACTTGGTTTTAACATTGTGGGAGGTGAAGATGGAGAAGGGATTTTT
ATCTCCTTCATCCTTGCTGGCGGACCTGCTGATCTAAGTGGAGAGCTCAGAAAAGGAGATCGCATCATAT
CGGTGAACAGTGTTGACCTCAGAGCTGCAAGTCACGAACAAGCAGCAGCTGCACTAAAGAACGCAGGCCA
AGCCGTCACCATCGTTGCGCAATATCGACCCGAAGAGTACAGTCGTTTTGAAGCTAAAATCCATGACTTA
CGGGAGCAGATGATGAATAGCAGTGTCAGTTCAGGGTCAGGGTCTCTTCGAACCAGCCAGAAGCGCTCCC
TCTATGTCAGAGCCCTCTTTGATTATGACAAGACTAAGGACAGCGGGCTTCCCAGTCAAGGACTGAACTT
CCGCTTTGGAGACATCCTCCATGTCATCAATGCTTCTGACGACGAGTGGTGGCAAGCCAGGCAGGTCACC
CCAGACGGGGAGAGTGACGAAGTCGGAGTGATTCCTAGTAAACGAAGAGTTGAGAAGAAGGAACGAGCCC
GATTAAAAACGGTCAAATTCAATTCTAAAACAAGAGGAGATAAAGGGCAGTCATTCAATGACAAGCGTAA
AAAGAACCTCTTTTCCCGAAAATTTCCCTTCTACAAGAACAAGGACCAGAGTGAACAGGAAACGAGTGAT
GCTGACCAGCACGTAACTTCTAATGCCAGCGATAGTGAAAGTAGTTACCGTGGTCAAGAAGAATATGTTT
TATCTTATGAGCCAGTGAATCAACAAGAAGTTAATTATACCCGACCAGTCATCATATTAGGACCTATGAA
AGACAGAGTAAATGATGACTTAATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTCCCTCATACAACT
AGACCGAAGCGTGACTATGAGGTGGATGGACGAGATTATCATTTTGTGACTTCAAGGGAACAGATGGAAA
AGGATATTCAGGAGCATAAGTTCATTGAAGCCGGCCAGTATAACAACCATCTGTATGGGACGAGCGTGCA
GTCCGTGCGAGCAGTGGCAGAGAAGGGCAAACATTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGG
TTGCAGATTGCACAGCTTTATCCAATATCTATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAA
TGAACAAGCGCCTAACAGAAGAGCAGGCCAGAAAAACATTTGAGAGAGCCATGAAGCTGGAGCAGGAGTT
CACTGAGCATTTCACAGCTATTGTCCAGGGAGACACGCTGGAGGACATTTACAACCAAGTGAAACAGATC
ATCGAAGAACAGTCTGGGCCTTACATCTGGGTCCCAGCGAAAGAAAAGCTATGA

Translation (927 aa):
MPVRKQDTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALIDIQEFYEVTLLDNPKCVDHS
KQCEPVQPVTTWEIASLPSTAVTSETLPGSLSPPVEKYRYQDEEVLPPEHISPQVTNEVLGPELVHVSEK
NLSEIENVHGFVSHSHISPIKPTEAVPPSSPIVPVTPALPVPAESTVVLPSAPQANPPPVLVNTDSLETP
TYVNGTDADYEYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVN
EADVRDVTHSKAVEALKEAGSIVRLYVKRRKPASEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYV
TKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYINDGYAPPDIT
NSSSQSVDNHVSPSSCLGQTPTSPARYSPISKAVLGDDEITREPRKVVLHRGSTGLGFNIVGGEDGEGIF
ISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYSRFEAKIHDL
REQMMNSSVSSGSGSLRTSQKRSLYVRALFDYDKTKDSGLPSQGLNFRFGDILHVINASDDEWWQARQVT
PDGESDEVGVIPSKRRVEKKERARLKTVKFNSKTRGDKGQSFNDKRKKNLFSRKFPFYKNKDQSEQETSD
ADQHVTSNASDSESSYRGQEEYVLSYEPVNQQEVNYTRPVIILGPMKDRVNDDLISEFPDKFGSCVPHTT
RPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKR
LQIAQLYPISIFIKPKSMENIMEMNKRLTEEQARKTFERAMKLEQEFTEHFTAIVQGDTLEDIYNQVKQI
IEEQSGPYIWVPAKEKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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