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Report for CCDS28278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28278.1 Public Mus musculus 16 D16Ertd472e 23 108 98 CCDS HistoryNCBI Gene:67102Re-query CCDS DB by CCDS ID:28278.1Re-query CCDS DB by GeneID:67102See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114218.1 ENSMUSP00000109856.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114218.1Link to Ensembl Protein Viewer:ENSMUSP00000109856.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114218Re-query CCDS DB by Protein ID:ENSMUSP00000109856
Original member Current member EBI ENSMUST00000114219.7 ENSMUSP00000109857.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114219.7Link to Ensembl Protein Viewer:ENSMUSP00000109857.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114219Re-query CCDS DB by Protein ID:ENSMUSP00000109857
Original member Current member EBI ENSMUST00000114220.8 ENSMUSP00000109858.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114220.8Link to Ensembl Protein Viewer:ENSMUSP00000109858.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114220Re-query CCDS DB by Protein ID:ENSMUSP00000109858
Original member Current member EBI ENSMUST00000232052.1 ENSMUSP00000156198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232052.1Link to Ensembl Protein Viewer:ENSMUSP00000156198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232052Re-query CCDS DB by Protein ID:ENSMUSP00000156198
Original member Current member EBI ENSMUST00000231973.1 ENSMUSP00000156370.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231973.1Link to Ensembl Protein Viewer:ENSMUSP00000156370.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231973Re-query CCDS DB by Protein ID:ENSMUSP00000156370
Original member Current member NCBI NM_001252438.1 NP_001239367.1 Accepted alive Link to Nucleotide Sequence:NM_001252438.1Link to Protein Sequence:NP_001239367.1Re-query CCDS DB by Nucleotide ID:NM_001252438Re-query CCDS DB by Protein ID:NP_001239367Link to BLAST:NP_001239367.1
Original member Current member NCBI NM_001252439.1 NP_001239368.1 Accepted alive Link to Nucleotide Sequence:NM_001252439.1Link to Protein Sequence:NP_001239368.1Re-query CCDS DB by Nucleotide ID:NM_001252439Re-query CCDS DB by Protein ID:NP_001239368Link to BLAST:NP_001239368.1
Original member Current member NCBI NM_001252440.1 NP_001239369.1 Accepted alive Link to Nucleotide Sequence:NM_001252440.1Link to Protein Sequence:NP_001239369.1Re-query CCDS DB by Nucleotide ID:NM_001252440Re-query CCDS DB by Protein ID:NP_001239369Link to BLAST:NP_001239369.1
Original member Current member NCBI NM_025967.4 NP_080243.3 Accepted alive Link to Nucleotide Sequence:NM_025967.4Link to Protein Sequence:NP_080243.3Re-query CCDS DB by Nucleotide ID:NM_025967Re-query CCDS DB by Protein ID:NP_080243Link to BLAST:NP_080243.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239367.1 290 Q9D7G4 290 100% 0 0
NP_001239368.1 290 Q9D7G4 290 100% 0 0
NP_001239369.1 290 Q9D7G4 290 100% 0 0
NP_080243.3 290 Q9D7G4 290 100% 0 0

Chromosomal Locations for CCDS 28278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 78545118 78545284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78546506 78546568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78547576 78548091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78575921 78576047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGAACGAAGAGGAGCAGTTTGTAAGCATTGACTTGAATGATGACAACATTTGCAGTGTTTGTAAACTGG
GAACAGACAAAGACACGCTCTCCTTCTGCCACATTTGCTTCGAGCTAAATCTCGAGGGAGTGCCAAAGTC
GAATCTTTTACACACCAAATCAGTGAGAGGCCATAAAGACTGCTTTGAAAAATACCATTTAATAGCAAAC
CAGGATTGTTCTCGTTCCAAGCTTTCCAAAAGTACTTATGAAGGAGTTAAAACCATCGTGAGTAAGAAGA
TAAACTGGATTGTGCAGTATGCCCAAAATAAAAATCTGGATTTGGAGTCCGAGTGTTCCAAAACTTCCCA
GCATCCCCTGTTGAATTTCAGGCATAAGCCAGAGAAGAAATTGCTCCCACAGTTTGACTCTCAGGTGCCA
AAGTACTCGGCAAAAGGCTCAGCCGGAAACGCAGGCAGCATCTCAAGCTATGCGCAGAGAATCCTGGAGC
ACAGAGAAAATACAGACTTCCGGCTGGGTTTATTGGAAGACGCGGATGCATTGTGGACTCACAGTCACAG
CCAGGCACAGAAAACAGAAGAGACAAGCTCTGGTCCGGAGGGGACTATCCAGACCCAGAATCCACATTAC
AGCCGTGAAGAATTGAATTCGATGACTCTTGCTGAAGTAGTACAACTGAGTGCGAAGCTCCAACAGCGAA
TCCAAGAGGTTTTTGAAGAGTTAACACACCAGGTGCAAGAGAAGGACTCTCTGGCGTCAGAGCTCCATGT
CCGTCACGTGGCTATCGAGCAACTCCTCAAGAACTGCTCCAAGTTGCCATGCCTCCAAGTGGGACGGACA
GGGACGAGGTCACACCTACCCATGAACCACTGA

Translation (290 aa):
MNEEEQFVSIDLNDDNICSVCKLGTDKDTLSFCHICFELNLEGVPKSNLLHTKSVRGHKDCFEKYHLIAN
QDCSRSKLSKSTYEGVKTIVSKKINWIVQYAQNKNLDLESECSKTSQHPLLNFRHKPEKKLLPQFDSQVP
KYSAKGSAGNAGSISSYAQRILEHRENTDFRLGLLEDADALWTHSHSQAQKTEETSSGPEGTIQTQNPHY
SREELNSMTLAEVVQLSAKLQQRIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNCSKLPCLQVGRT
GTRSHLPMNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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