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Report for CCDS21516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21516.1 Public Mus musculus 7 Folr2 23 108 98 CCDS HistoryNCBI Gene:14276Re-query CCDS DB by CCDS ID:21516.1Re-query CCDS DB by GeneID:14276See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094141.6 ENSMUSP00000091692.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094141.6Link to Ensembl Protein Viewer:ENSMUSP00000091692.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000094141Re-query CCDS DB by Protein ID:ENSMUSP00000091692
Original member Current member EBI ENSMUST00000210598.1 ENSMUSP00000147920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210598.1Link to Ensembl Protein Viewer:ENSMUSP00000147920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210598Re-query CCDS DB by Protein ID:ENSMUSP00000147920
Original member Current member NCBI NM_001303231.1 NP_001290160.1 Accepted alive Link to Nucleotide Sequence:NM_001303231.1Link to Protein Sequence:NP_001290160.1Re-query CCDS DB by Nucleotide ID:NM_001303231Re-query CCDS DB by Protein ID:NP_001290160Link to BLAST:NP_001290160.1
Original member Current member NCBI NM_001303239.1 NP_001290168.1 Accepted alive Link to Nucleotide Sequence:NM_001303239.1Link to Protein Sequence:NP_001290168.1Re-query CCDS DB by Nucleotide ID:NM_001303239Re-query CCDS DB by Protein ID:NP_001290168Link to BLAST:NP_001290168.1
Original member Current member NCBI NM_008035.2 NP_032061.1 Accepted alive Link to Nucleotide Sequence:NM_008035.2Link to Protein Sequence:NP_032061.1Re-query CCDS DB by Nucleotide ID:NM_008035Re-query CCDS DB by Protein ID:NP_032061Link to BLAST:NP_032061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290160.1 251 Q05685 251 100% 0 0
NP_001290168.1 251 Q05685 251 100% 0 0
NP_032061.1 251 Q05685 251 100% 0 0

Chromosomal Locations for CCDS 21516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101840175 101840461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101840591 101840726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101840812 101840997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101843668 101843814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGGCCTGGAAACAGACACCACTCTTGCTTTTGGTCTACATGGTCACAACAGGCAGTGGCCGGGACAGAA
CAGACCTACTCAACGTTTGCATGGATGCCAAACACCATAAGACAAAGCCGGGCCCCGAGGACAAGCTGCA
TGACCAGTGTAGTCCATGGAAGAAAAATGCCTGTTGCTCAGTCAACACCAGCCAGGAGCTACACAAGGCT
GACTCCCGTCTGTACTTCAACTGGGATCACTGTGGCAAGATGGAGCCTGCCTGTAAGAGTCACTTCATCC
AAGACTCCTGCCTGTATGAGTGCTCCCCCAACCTTGGGCCTTGGATCCAGCAAGTGGACCAGAGTTGGCG
TAAAGAGCGTTTCCTGGATGTGCCCTTATGCAAAGAGGACTGTCACCAGTGGTGGGAAGCCTGTCGTACC
TCCTTTACCTGCAAGAGAGACTGGCATAAAGGCTGGGACTGGTCCTCAGGCATTAACAAGTGCCCAAACA
CAGCACCCTGTCACACGTTTGAGTACTACTTCCCGACACCAGCCAGCCTTTGCGAGGGTCTCTGGAGTCA
CTCCTACAAGGTCAGCAACTACAGCAGAGGGAGTGGCCGCTGCATCCAGATGTGGTTTGACTCAACCCAG
GGCAATCCGAATGAGGACGTGGTGAAGTTTTATGCTTCCTTTATGACATCTGGGACTGTGCCCCATGCAG
CAGTACTTCTTGTGCCCAGCCTGGCCCCAGTGCTGTCATTATGGCTCCCTGGCTGA

Translation (251 aa):
MAWKQTPLLLLVYMVTTGSGRDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCSVNTSQELHKA
DSRLYFNWDHCGKMEPACKSHFIQDSCLYECSPNLGPWIQQVDQSWRKERFLDVPLCKEDCHQWWEACRT
SFTCKRDWHKGWDWSSGINKCPNTAPCHTFEYYFPTPASLCEGLWSHSYKVSNYSRGSGRCIQMWFDSTQ
GNPNEDVVKFYASFMTSGTVPHAAVLLVPSLAPVLSLWLPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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