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Report for CCDS89442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89442.1 Public Mus musculus 2 Ndor1 23 108 98 CCDS HistoryNCBI Gene:78797Re-query CCDS DB by CCDS ID:89442.1Re-query CCDS DB by GeneID:78797See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228052.1 ENSMUSP00000154261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228052.1Link to Ensembl Protein Viewer:ENSMUSP00000154261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228052Re-query CCDS DB by Protein ID:ENSMUSP00000154261
Original member Current member NCBI NM_001252542.1 NP_001239471.1 Accepted alive Link to Nucleotide Sequence:NM_001252542.1Link to Protein Sequence:NP_001239471.1Re-query CCDS DB by Nucleotide ID:NM_001252542Re-query CCDS DB by Protein ID:NP_001239471Link to BLAST:NP_001239471.1

Chromosomal Locations for CCDS 89442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25245775 25246149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25246332 25246595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25248122 25248240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25248336 25248485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25248632 25248746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25248905 25249012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25249100 25249320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25249405 25249526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25249794 25250003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25250096 25250197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25250280 25250378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25251721 25251818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25254864 25254869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGAAGAACTTCTGGAGGTTCATATTCCGGAAGAGCCTGCCGTCCAGCTCCCTCTGTCAAATGGATTTTG
CTGTCCTAGGCCTCGGGGATTCCTCATATGCCAAGTTCAACTTTGTGGCCAAGAAGCTACATCGTAGGCT
GCTGCAGCTAGGAGGCAGTGCGCTTCTGCCCCCATGTCTGGGTGATGACCAGCATGAGCTGGGGCCTGAT
GCTGCCATTGACCCCTGGGTAGGAGATCTTTGGGAGAAGATAATGGTTATGTACCCAGTACCCCTTGACA
TTCCTGAGATTCCTCATGGAGTCCCCTTGCCCTCCAAGTTCATCTTTCAGTTTCTTCAGGAGGTCCCCAG
CATAGGGGCTGAGGAGCTCAACATAGCCAGCTCAGCCCCTCAGACACCCCCATCAGAGTTACAGCCCTTC
CTGGCACCTGTGATCACCAACCAGAGGGTCACTGGCCCCCAACACTTTCAGGATGTTCGGCTGATTGAAT
TTGACATTACAGACTCCAATATCAGCTTTGCTGCTGGTGATGTTGTATTCATTTTGCCCTCTAACTCGGA
GGCCCACACCCAGCAGTTCTGCCAAGTGTTGTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGG
GAACCAGGTGTCCCTGACCCACCAGGGCTGCCTCAGCCCTGTACTGTGTGGAACCTCGTGTCCCAGTACT
TGGACATTGCCAGTGTGCCCCGCCGTTCCTTCTTTGAGCTCCTGGCTTGTCTCTCCCAACATGCGCTGGA
GCGAGAGAAGCTGCTGGAATTGAGCTCTGCCAGAGGTCAGGAAGAGCTCTGGGAGTACTGCAGTCGGCCC
CGCAGAACCATCTTGGAGGTGCTATGCGACTTTCCACATACAGCGGGTGCCATTCCTCCAGACTACCTTT
TGGACCTAATCCCTCGGATCCGCCCACGGGCCTTCTCCATTGCTTCCTCCCTACTGGCTCATCCCAGGAG
GCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGTCTGAAGGAGCCCCGCCATGGTCTCTGCTCC
TCCTGGCTAGCATCCCTGAATCCTGGGCAAGCAGGACCTGTCCGGGTGCCTCTGTGGGTACGTCCTGGGA
GCCTCGTGTTCCCAAAAACACCAGACACACCCATTATCATGGTGGGGGCTGGAACTGGTGTGGCCCCCTT
CCGAGCAGCCATTCAGGAACGAGTGGCTCATGGCCAAACTGGAAACTTCTTGTTCTTTGGCTGCCGCCAG
CGGGATCAGGACTTCTACTGGCAGACTGAATGGCAGAAGCTAGAGCAGAAGGGCTGGCTGACCCTGGTTA
CAGCCTTCTCCCGGGAGCAGTCATCCTGGAGTCTCCGTCTACGCATCCTGACCTCTGTTCTAGTGGTAAC
CTGGGACCTAATGACACCAGCTCTGTGTCTACTAGTTCACCCGGTGCTTCTCTGGGTCCTGAGCTCTTGG
ACCCACTGTGCCAGCTACCAGCAGATGGAGAGGATGATCTCAGGGCCCCTCTGGGTGCCAGAACTCCAGA
CAGTAAACCGGAACTGGAGGCCAGAGACCCATCCGCTGCCAGGGCCCTGGAGTCAACTGTGGAAGAGCAG
GAAGAAGACACCTATGCTAGAGTGGGAGATCTGTCAGCTGCAGGAGGAACTGCTTCGAGCTGATGGACCC
CAGCGCCCAATGCGGACTGCATCCGTCACAGCCCTGCATCCTGGCCCTTGGCCCTGGGGTCCCTTAGAGC
ACCGCTACCAGCTGCGCTTCCTGGCAGGGCCTGTGGGAGGGCGAAGCTGTCTCCCCTTCCTGCCCTGCCC
TCCCAGCCTAGGCACCTGGTTGTGGGCACTACGGGAACGTGGCCCCTGTGCCCGCCGCTTGTCACTGCTG
AGCCTACTGGTCCTTGAACTGCTCGGGCTGGTGGTCATCTTCATGCCGCTCCTTTTACTAGGGGTGCTCT
TCATGCTGCTAGACCGTTCCACCCACTAA

Translation (662 aa):
MKNFWRFIFRKSLPSSSLCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSALLPPCLGDDQHELGPD
AAIDPWVGDLWEKIMVMYPVPLDIPEIPHGVPLPSKFIFQFLQEVPSIGAEELNIASSAPQTPPSELQPF
LAPVITNQRVTGPQHFQDVRLIEFDITDSNISFAAGDVVFILPSNSEAHTQQFCQVLCLDPNQFFTLKPR
EPGVPDPPGLPQPCTVWNLVSQYLDIASVPRRSFFELLACLSQHALEREKLLELSSARGQEELWEYCSRP
RRTILEVLCDFPHTAGAIPPDYLLDLIPRIRPRAFSIASSLLAHPRRLQILVAVVKYQTRLKEPRHGLCS
SWLASLNPGQAGPVRVPLWVRPGSLVFPKTPDTPIIMVGAGTGVAPFRAAIQERVAHGQTGNFLFFGCRQ
RDQDFYWQTEWQKLEQKGWLTLVTAFSREQSSWSLRLRILTSVLVVTWDLMTPALCLLVHPVLLWVLSSW
THCASYQQMERMISGPLWVPELQTVNRNWRPETHPLPGPWSQLWKSRKKTPMLEWEICQLQEELLRADGP
QRPMRTASVTALHPGPWPWGPLEHRYQLRFLAGPVGGRSCLPFLPCPPSLGTWLWALRERGPCARRLSLL
SLLVLELLGLVVIFMPLLLLGVLFMLLDRSTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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