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Report for CCDS90516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90516.1 Public Mus musculus 9 Ldlr 23 108 98 CCDS HistoryNCBI Gene:16835Re-query CCDS DB by CCDS ID:90516.1Re-query CCDS DB by GeneID:16835See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213114.1 ENSMUSP00000149431.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213114.1Link to Ensembl Protein Viewer:ENSMUSP00000149431.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213114Re-query CCDS DB by Protein ID:ENSMUSP00000149431
Original member Current member NCBI NM_001252658.1 NP_001239587.1 Accepted alive Link to Nucleotide Sequence:NM_001252658.1Link to Protein Sequence:NP_001239587.1Re-query CCDS DB by Nucleotide ID:NM_001252658Re-query CCDS DB by Protein ID:NP_001239587Link to BLAST:NP_001239587.1

Chromosomal Locations for CCDS 90516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21723778 21723844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21731747 21731869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21732312 21732434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21733491 21733874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21735237 21735359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21737220 21737342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21737874 21737993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21738855 21738980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21739386 21739557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21739649 21739873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21742187 21742305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21742657 21742796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21743922 21744063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21745732 21745905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21746362 21746439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21747149 21747306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21748141 21748176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGAGCACCGCGGATCTGATGCGTCGCTGGGTCATCGCCCTGCTCCTGGCTGCTGCCGGAGTTGCAGCAG
AAGACTCATGCAGCAGGAACGAGTTCCAGTGTAGAGACGGAAAATGCATCGCTAGCAAGTGGGTGTGCGA
TGGCAGCCCCGAGTGCCCGGATGGCTCCGATGAGTCCCCAGAGACATGCATGTCTGTCACCTGTCAGTCC
AATCAATTCAGCTGTGGAGGCCGTGTCAGCCGATGCATTCCTGACTCCTGGAGATGTGATGGACAGGTAG
ACTGTGAAAATGACTCAGACGAACAAGGCTGTCCCCCCAAGACGTGCTCCCAGGATGACTTCCGATGCCA
GGATGGCAAGTGCATCTCCCCGCAGTTTGTGTGTGATGGAGACCGAGATTGCCTAGATGGCTCTGATGAG
GCCCACTGCCAGGCCACCACTTGTGGCCCCGCCCACTTCCGCTGCAACTCATCCATATGCATCCCCAGTC
TTTGGGCCTGCGACGGGGATGTCGACTGTGTTGACGGCTCCGATGAGTGGCCACAGAACTGCCAGGGCCG
AGACACGGCCTCCAAAGGCGTTAGCAGCCCCTGCTCCTCCCTGGAGTTCCACTGTGGTAGCAGTGAGTGT
ATCCATCGCAGCTGGGTCTGTGACGGCGAGGCAGACTGCAAGGACAAGTCAGATGAGGAGCACTGCGCGG
TGGCCACCTGCCGACCTGATGAATTCCAGTGTGCAGATGGCTCCTGCATTCACGGTAGCCGCCAGTGTGA
CCGTGAACATGACTGCAAGGACATGAGCGACGAGCTCGGCTGCGTCAATGTGACACAGTGTGATGGCCCC
AACAAGTTCAAGTGTCACAGTGGGGAGTGCATCAGCTTGGACAAGGTGTGCGACTCCGCCCGCGACTGCC
AGGACTGGTCGGATGAGCCCATCAAGGAGTGCAAGACCAACGAGTGTTTGGACAACAATGGTGGCTGTTC
CCACATCTGCAAGGACCTCAAGATTGGCTCTGAGTGCCTGTGTCCCAGCGGCTTCCGGTTGGTGGACCTC
CACAGGTGTGAAGATATTGACGAGTGTCAGGAGCCAGACACCTGCAGCCAGCTCTGTGTGAACCTGGAAG
GCAGCTACAAGTGTGAGTGCCAGGCCGGCTTCCACATGGACCCACACACCAGGGTCTGCAAGGCTGTGGG
CTCCATAGGCTATCTGCTCTTCACCAACCGCCACGAGGTCCGGAAGATGACCCTGGACCGCAGCGAGTAC
ACCAGTCTGCTCCCCAACCTGAAGAATGTGGTGGCTCTCGACACGGAGGTGACCAACAATAGAATCTACT
GGTCCGACCTGTCCCAAAAAAAGATCTACAGCGCCCTGATGGACCAGGCCCCTAACTTGTCCTACGACAC
CATCATCAGTGAGGACCTGCATGCCCCTGACGGGCTGGCGGTAGACTGGATCCACCGCAACATCTACTGG
ACAGATTCAGTCCCAGGCAGCGTATCTGTGGCTGACACCAAGGGCGTAAAGAGGAGGACACTGTTCCAAG
AGGCAGGGTCCAGACCCAGAGCCATCGTAGTGGACCCTGTGCATGGCTTCATGTACTGGACAGATTGGGG
AACACCCGCCAAGATCAAGAAAGGGGGTTTGAATGGTGTGGACATCCACTCACTGGTGACCGAAAACATC
CAGTGGCCAAATGGCATCACACTAGATCTTTCCAGTGGCCGTCTCTATTGGGTTGATTCCAAACTCCACT
CTATCTCCAGCATCGATGTCAATGGGGGCAATCGGAAAACCATTTTGGAGGATGAGAACCGGCTGGCCCA
CCCCTTCTCCTTGGCCATCTATGAGGACAAAGTGTATTGGACAGATGTCATAAACGAAGCCATTTTCAGT
GCCAATCGACTCACGGGTTCAGATGTGAATTTGGTGGCTGAAAACCTCTTGTCCCCGGAGGACATTGTCC
TGTTCCACAAGGTCACACAGCCTAGAGAAGTCGACACTGTACTGACCACCCAGGGGACATCCGCCGTCCG
GCCTGTGGTCACCGCATCAGCTACCAGGCCACCGAAGCACAGTGAGGATCTCTCAGCTCCCAGTACTCCT
AGGCAGCCTGTGGACACCCCAGGGCTCAGCACAGTGGCGTCAGTGACAGTGTCCCACCAAGTCCAGGGTG
ACATGGCTGGCAGAGGGAATGAGGAGCAGCCACATGGTATGAGGTTCCTGTCCATCTTCTTCCCTATTGC
ACTGGTTGCCCTCCTTGTCCTTGGGGCCGTCCTGCTGTGGAGGAACTGGCGGCTGAAGAACATCAACAGC
ATAAACTTTGACAACCCAGTCTACCAGAAGACCACAGAGGACGAGCTCCACATTTGCCGAAGCCAGGATG
GCTATACCTACCCCTCAAGACAGATGGTCAGCCTGGAGGACGATGTGGCATGA

Translation (810 aa):
MSTADLMRRWVIALLLAAAGVAAEDSCSRNEFQCRDGKCIASKWVCDGSPECPDGSDESPETCMSVTCQS
NQFSCGGRVSRCIPDSWRCDGQVDCENDSDEQGCPPKTCSQDDFRCQDGKCISPQFVCDGDRDCLDGSDE
AHCQATTCGPAHFRCNSSICIPSLWACDGDVDCVDGSDEWPQNCQGRDTASKGVSSPCSSLEFHCGSSEC
IHRSWVCDGEADCKDKSDEEHCAVATCRPDEFQCADGSCIHGSRQCDREHDCKDMSDELGCVNVTQCDGP
NKFKCHSGECISLDKVCDSARDCQDWSDEPIKECKTNECLDNNGGCSHICKDLKIGSECLCPSGFRLVDL
HRCEDIDECQEPDTCSQLCVNLEGSYKCECQAGFHMDPHTRVCKAVGSIGYLLFTNRHEVRKMTLDRSEY
TSLLPNLKNVVALDTEVTNNRIYWSDLSQKKIYSALMDQAPNLSYDTIISEDLHAPDGLAVDWIHRNIYW
TDSVPGSVSVADTKGVKRRTLFQEAGSRPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIHSLVTENI
QWPNGITLDLSSGRLYWVDSKLHSISSIDVNGGNRKTILEDENRLAHPFSLAIYEDKVYWTDVINEAIFS
ANRLTGSDVNLVAENLLSPEDIVLFHKVTQPREVDTVLTTQGTSAVRPVVTASATRPPKHSEDLSAPSTP
RQPVDTPGLSTVASVTVSHQVQGDMAGRGNEEQPHGMRFLSIFFPIALVALLVLGAVLLWRNWRLKNINS
INFDNPVYQKTTEDELHICRSQDGYTYPSRQMVSLEDDVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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